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NanoPlot
Plotting scripts for long read sequencing datananopack
An overview of all nanopack toolsnanofilt
Filtering and trimming of long read sequencing datachopper
cramino
A *fast* tool for BAM/CRAM quality evaluation, intended for long readsnanocomp
Comparison of multiple long read datasetsnanostat
Create statistic summary of an Oxford Nanopore read datasetmethplotlib
Plotting tools for nanopore methylation datanano-snakemake
A snakemake pipeline for SV analysis from nanopore genome sequencingnanolyse
Remove lambda phage reads from a fastq filesurpyvor
A python wrapper around SURVIVORkyber
DEA.R
Script to automate differential expression analysis using DESeq2, edgeR or limma-voomphasius
nanoget
Functions to extract information from Oxford Nanopore sequencing data and alignmentsnanomath
A few simple math function for other Oxford Nanopore processing scriptsPromisingPreprint
A python twitter bot tweeting about preprints reaching an interesting altmetric scoreSTRdust
Tandem repeat genotyping from long readsenrichr_cli
Python script to use enrichr from command line (http://amp.pharm.mssm.edu/Enrichr/)nanotest
Small test datasets for testing nanopack scripts and modulesmake_arrow
A Rust tool to create an arrow file from a cram/bam filepathSTR
Repository with code for the analysis of pathogenic STRs in the 1000G ONT resequencing dataread_length_SV_discovery
nanoplotter
Plotting functions of Oxford Nanopore sequencing datafast5purge
Purge a fast5 file from sensitive informationtool-packaging
Some notes on how to make a pypi packageGermlineCNVCaller
Testing the GATK4.beta.5 GermlineCNVCallernanosplit
Splitting Oxford Nanopore data in a fail and pass dataset using a user defined quality cutoffdetermine-gender
Scripts to determine the gender of samples in exome and transcriptome sequencingcombine_images
Bit of Python code to resize and combine imagesLove Open Source and this site? Check out how you can help us