wassermanlab/TF-Binding-Transfer-Learning

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Created about 4 years ago
Updated over 3 years ago

wassermanlab/TF-Binding-Transfer-Learning

wassermanlab

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IPython notebooks and scripts for performing the different transfer learning experiments

ExplaiNN

ExplaiNN: interpretable and transparent neural networks for genomics

Jupyter Notebook

Variant_catalogue_pipeline

Variant catalogue pipeline

JASPAR-UCSC-tracks

Code and data used to create the JASPAR UCSC Genome Browser tracks data hub

TFFM

BiasAway

JASPAR-inference-tool

Code and data used by the JASPAR profile inference tool

oPOSSUM3

oPOSSUM Version 3

MANTA2

MANTA version 2.0

OpenFlexTyper

An FM-index based tool for the rapid search of variants/sequences within unmapped read sets.

TF-Binding-Matrix

A sparse 3D matrix of 2,503,732 bound and open regions across 175 transcription factors and 70 cells/tissues

gene2wordclouds

GeneBreaker

GeneBreaker - Enabling the creation of synthetic rare disease scenarios

TFe

Transcription Factor encyclopedia

variome

ADS

Allele Dispersion Score : Quantifying the range of allele frequencies across populations, based on UMAP

revup

ORCAtk

The ORCA toolkit

TFBS_Visualization

MANTA

JASPAR-biopython

Development of modules for expanded JASPAR functionality in BioPython

OnTarget

jaspar-bioruby

BioRuby gem for JASPAR

OpenFlexTyper_restore

GeneYenta

CAGEd-oPOSSUM

CAGEd-oPOSSUM: Motif enrichment analysis from CAGE derived TSSs

pubmed_db