wang-q/egas

This repository has been archived on 03/Oct/2018
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Created over 9 years ago
Updated about 8 years ago

wang-q/egas

wang-q

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DEPRECATED: Whole genome self alignments procedure for finding segment duplications (and partial WGD).

lecture-slides

Slides for my course "General Biology".

intspan

Command line tools for IntSpan related bioinformatics operations

phylo-tree

Create phylogenetics trees by xelatex/tikz/forest

dotfiles

My configuration files on macOS

windows

Setting-up scripts for Windows

nwr

`nwr` is a command line tool for working with NCBI taxonomy, Newick files and assembly reports

withncbi

egaz and alignDB work with external (NCBI/EBI) data

App-Egaz

faops

faops operates fasta files

egaz

(DEPRECATED) The backend of Easy Genome Aligner

multiz

A strip-down version of multiz-tba

newicktree

Draw Newick format phylogenetic trees.

ubuntu

Setting-up scripts for Ubuntu 20.04

gams

Genome Analyst with in-Memory Storage

hnsm

hnsm - Homogeneous Nucleic acid Smart Matching

homebrew-tap

My tap for unbrewed repos

genomes

plastid

sra

Work with NCBI SRA/EBI ENA

AlignDB-IntSpan

Handling of sets containing integer spans.

fars

Command line tools for fasta files

fig_table

Create figs and tables from excel files. Mainly works on Windows.

AlignDB-Codon

translate sequences and calculate Dn/Ds

alignDB

Analyze the relationship between indels and substitutions in genomes