Discover vsoch/dna-seq Open Source project by Vanessasaurus (@vsoch)

A Jekyll version of the beautiful Docsy!

784

docsy-jekyll

open a pull request when a branch is pushed or updated

182

pull-request-action

example of using nginx upload module with Django!

162

django-nginx-upload

The Material theme from MkDocs provided as a Jekyll template, optimized for GitHub Pages

mkdocs-jekyll

ascii database of pokemon... in python!

pokemon

forward

Port Forwarding Utility

hospital chargemaster lists for open source healthcare

hospital-chargemaster

Testing doing basic regression with web assembly

regression-wasm

scif

scientific filesystem: a filesystem organization for scientific software and metadata

A jekyll-ized documentation theme using tailwind.css based on Fly.io's theme

tw-jekyll

Docker compose to bring up Open OnDemand with SLURM, Centos 7

ood-compose

Python implementation of Open Containers Initiative (OCI) specifications

oci-python

Convert T score brain statistical map to Z score map

TtoZ

brain image comparison and visualization methods for python!

pybraincompare

a quick shiny server in a Singularity Container. For @griznog!

singularity-shiny

QueueMe is a job queue, manager, and dashboard

qme

a container to convert swf files to mp4 (video)

convert-swf

Dockerfile

django-oci

Open Containers distribution spec module for Django (under development)

Hi, I'm Vanessa (vsoch, the Vanessasaurus) and this is where I write things.

vsoch.github.io

quick lessons for reproducible research practices

lessons

command line daemon for helping you out

helpme

version controlled knowledge base for documentation and support

askci

markdown syntax and credit system for software!

citelang

examples of using Singularity containers for web-based products

singularity-web

Django plugin for online machine learning with river (under-development)

django-river-ml

An example reproducible monitor for system metrics using the watchme client

watchme-system

Save your Docker Hub containers from ultimate doom!

docker-pull

banner-maker

Dynamically generate svg banner with text content (flask application)

Stanford open modules for python

som

a search interface for any user account or organization

Melodic + Dual Regression Package in Python

ica-

testing implementation of Cognitive Atlas as neo4j served with docker, for some application

cogat-docker

Django module to create GitHub style contributions graph

contributions-django

data visualization for code (experimental project)

codeart

open source, transparent container registry for reproducible science

containershare

TeX

google-group-export

An interactive script to export a Google Group

Update your GitHub actions' versions, syntax, and other!

action-updater

Various actions to add confucious wisdom on pull request success, fail, etc.

confucious-actions

Github action example to deploy container-diff derived tree to Github pages, along with container metadata

containertree

HCL

libabigail-python

testing python bindings for libabigail

Bootstrap 4 theme, sb-admin, Jekyll version

sb-admin-jekyll

Testing loading a SIF into a browser using Web Assembly (under development)

sifweb

40-avocados

Many ways I could spend $40.00

Select a resource or service based on filtering down criteria

resource-explorer

A Docker base for running Orthanc for the School of Medicine

som-orthanc

A dataset to extract container metadata from Github Dockerfiles (under development)

github-dockerfiles

A shoutout to the top chonker repositories on GitHub.

chonker-awards

Separate examples repository for codeart Python module, since data and image files tend to be large.

codeart-examples

My first Kubernetes operator! (under development)

lolcow-operator

create a mosaic of brain images to match any image template

brainart

open source datasets for machine learning, the dinosaur datasets

datasets

A jekyll theme optimized for reference management and note taking

notes-jekyll

Nifti Template Matching in Python

pyCorr

Testing a library to generate trees and graphs from ELF

elfcall

module for generating Julia Set artwork

juliart

deprecated web interface for noisecloud (previously wordpress) interface

noisecloud-www

pe-predictive

MATLAB scripts is intended for visualizing and preparing raw data for use with a supervised classifier

fvplay

MATLAB

ohbm

python api wrapper for the ohbm conference

A docker container to run the beloved asciiquarium. Because you can't kill these fish.

asciiquarium

Dockerfile

nushell-plugin-python

Python module for easy creation of nushell plugins

Container database metadata extraction and data-container builder

cdb

dinosaur-lessons

dinosaur is teaching!

robot puzzle solver, maybe

puzzles

nidmviewer

NIDM Results Viewer

attempt at a fun simulation to evolve avocado eating dinosaurs

dinosaur-dilemma

Python to javascript sandwich matching game. Becaue we need this now.

make-me-a-sandwich

I got distracted 10 hours ago, and this is what happened.

robots

Caliper is a tool for measuring and assessing change in packages.

caliper

*insert no idea what he's doing dog*

learning-rust

Rust

uptodate

Client and GitHub action to keep repository contents up to date (currently support for Docker)

natacha-bot

The natacha bot has opinions about politics and art.

Lua

thesis

html generator for a latex (zipped) thesis from Overleaf

A toolbox to find if gene sets and drugs are meaningfully related [in development]

gene2drug

contributor-ci

tools and resources for assessing contributions

Generate memes using Markov Models

markovmeme

Generate markdown report for pytest tests in GitHub actions

pytest-github-report

Slowly learning clingo, and writing notebooks that walk you through logic programs (under development)

clingo-lessons

GoLang library for creating nushell plugins (under development!)

nu-plugin

vbmis.com

deprecated content from an old website, for archive

a template for sharing a repo2docker R container, intended for use with https://vsoch.github.io/containershare

repo2docker-r

Methods to link disorders to behaviors, and do disorder comparison

DisorderBehavior

Debian build (based on nushell/nushell) for nu! (under development)

nushell-debian

Makefile

singularity-tools

collection of command line tools for working with Singularity and Docker

An example plugin for Nushell in Python that catches ascii pokemon

nushell-plugin-pokemon

Preparing for a fun, open source Halloween!

candy-generator

A story of how people influence software design.

containers-story

testing development of an app catalog with elm (under development)

elm-app-catalog

grid parameters and testing for Python modules and functions

gridtest

Griznog, eternally trapped in Python, and a container for forever access to his wisdom.

griznog

trying to build qt-creator into a Docker container for easy usage.

qt-creator

search github repos for python functions and generate standard data structures for them

repofish

A django application to demo a bone age prediction model

boneage

A quick example to show building with a user/group id, and creating files that aren't root owned

docker-permissions

Dockerfile

nushell-plugin-len

An example ls plugin for nushell using golang

insult-go

generate Shakespearean insults with GoLang and Web Assembly. Because why not.

freegenes

FreeGenes BioNode with Django

legacy wiki from pre and early graduate school

wiki

MATLAB

100

MRtools

Module for neuroimaging data manipulation and sample applications