virtool/virtool-core

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Language
Python
License
MIT License
Created about 4 years ago
Updated 3 months ago

virtool/virtool-core

virtool

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Core utilities for Virtool and associated packages

virtool

Viral infection diagnostics using next-generation sequencing

virtool-ui

The browser frontend for Virtool

virtool-website

The Virtool product website

workflow-pathoscope

A workflow for detecting known viruses in Virtool

virtool-workflow

A framework for building Virtool workflows

dev

Developer tooling for Virtool.

pyfixtures

Pytest style fixtures outside of Pytest

virtool.ca

The new website for Virtool

compose

workflow-nuvs

A workflow for identifying novel viruses in Virtool

virtool-hmm

Profile HMMs and annotations for Virtool and NuVs

ref-builder

Build and maintain reference sets of pathogen genome sequences.

virtool-maintenance

virtool-contrib-guide

ref-plant-viruses

An official Virtool reference for plant viruses

virtool-ws

Websocket service for Virtool

virtool-cli

A command line interface for working with Virtool data

workflow-create-sample

A workflow for creating Virtool samples

hmm-viruses

HMM data for predicting novel viruses

virtool-migration

Alembic migrations for Virtool

workflow-iimi

A workflow for detecting known viruses using ML in Virtool

ml-plant-viruses

A machine learning model for detecting plant viruses.

workflow-create-subtraction

A workflow for creating Virtool subtractions

external-tools

workflow-build-index

A workflow for building Virtool reference indexes

workflow-tools

A Docker image with bioinformatics tools used by virtool-workflow

virtool-database

An official virus reference database for Virtool

virtool-operator

A Helm chart and Kubernetes operator for keeping Virtool updated without downtime.