• Stars
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    152
  • Rank 244,685 (Top 5 %)
  • Language
    Python
  • License
    MIT License
  • Created over 5 years ago
  • Updated 10 months ago

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Repository Details

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

seq2science

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Seq2science is the attempt of the van heeringen lab to generate a collection of generic pipelines/workflows which can be used by complete beginners to bioinformatics and experienced bioinformaticians alike. Please take a look at our docs for help with installation, how to run it, and best practices.

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Our supported workflows:

New users

Information for new users, such as how to install and configure can be found in our getting started page, and our Frequently Asked Questions (FAQ) section.

Feedback

Anything not working as expected? Please reach out to us via our issues page and we'll try to help you as soon as possible!