vanheeringen-lab/psap vanheeringen-lab/psap

  • Stars
    star
    4
  • Rank 3,304,323 (Top 66 %)
  • Language
    Python
  • License
    MIT License
  • Created almost 4 years ago
  • Updated over 2 years ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
vanheeringen-lab/psap
github

vanheeringen-lab

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

CLI interface for the PSAP classifier. PSAP implements a RandomForest approach to predict the probability of proteins to mediate protein phase separation (PPS)

More Repositories

1

genomepy

genes and genomes at your fingertips
Python
360
star
2

seq2science

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.
Python
152
star
3

gimmemotifs

Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.
Python
107
star
4

ANANSE

Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.
Python
77
star
5

scepia

Single Cell Epigenome-based Inference of Activity
Jupyter Notebook
19
star
6

Transcriptional_Burst_Kinetics

Python
3
star
7

cfb_book

Textbook for the Computation for Biologists course @ Radboud University
Jupyter Notebook
2
star
8

anansnake

Automate long-running ANANSE analyses with snakemake
Python
1
star
9

gimme-analysis

Jupyter Notebook
1
star
10

learnr.proto

R
1
star