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genomepy
genes and genomes at your fingertipsseq2science
Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.gimmemotifs
Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.ANANSE
Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.scepia
Single Cell Epigenome-based Inference of Activitypsap
CLI interface for the PSAP classifier. PSAP implements a RandomForest approach to predict the probability of proteins to mediate protein phase separation (PPS)Transcriptional_Burst_Kinetics
cfb_book
Textbook for the Computation for Biologists course @ Radboud Universitygimme-analysis
learnr.proto
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