Discover vanheeringen-lab/ANANSE Open Source project

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Python
License
MIT License
Created over 5 years ago
Updated 8 months ago

vanheeringen-lab

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Prediction of key transcription factors in cell fate determination using enhancer networks. See full ANANSE documentation for detailed installation instructions and usage examples.

genomepy

genes and genomes at your fingertips

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seq2science

Automated and customizable preprocessing of Next-Generation Sequencing data, including full (sc)ATAC-seq, ChIP-seq, and (sc)RNA-seq workflows. Works equally easy with public as local data.

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gimmemotifs

Suite of motif tools, including a motif prediction pipeline for ChIP-seq experiments. See full GimmeMotifs documentation for detailed installation instructions and usage examples.

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107

scepia

Single Cell Epigenome-based Inference of Activity

Jupyter Notebook

psap

CLI interface for the PSAP classifier. PSAP implements a RandomForest approach to predict the probability of proteins to mediate protein phase separation (PPS)

Python

Transcriptional_Burst_Kinetics

Python

cfb_book

Textbook for the Computation for Biologists course @ Radboud University

Jupyter Notebook

anansnake

Automate long-running ANANSE analyses with snakemake

Python

gimme-analysis

Jupyter Notebook

learnr.proto

vanheeringen-lab/ANANSE

vanheeringen-lab

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