urmi-21/pyrpipe

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Language
Python
License
MIT License
Created almost 5 years ago
Updated over 3 years ago

urmi-21/pyrpipe

urmi-21

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Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

COVID-19-RNA-Seq-datasets

A repository for sharing information on available COVID-19 RNA-Seq datasets

orfipy

Fast and flexible ORF finder

MetaOmGraph

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

PLncPRO

A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)

TCGA-Data-Analysis

Examples on processing and working with TCGA mutation and RNA-Seq data

COVID-DEA

African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors that are associated with immunologic and infectious functions and environmental exposures

csvtoxl

Easily convert csv/tsv to excel (xlsx) taking care of gene names or other data vulnerable to auto conversion by MS-Excel

Human_orphan_genes

A pan-tissue pan-cancer compendium of human orphan genes

COVID-biorxiv

Flexible query for biorxiv and medRxiv COVID-19 collection

covid-quantification

A pipeline to quantify COVD-19 infected RNA-Seq samples

sra-pyutils

Easy SRA metadata

Stat579Project