Discover urmi-21/COVID-DEA Open Source project

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MIT License
Created over 4 years ago
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urmi-21

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African Americans and European Americans exhibit distinct gene expression patterns across tissues and tumors that are associated with immunologic and infectious functions and environmental exposures

pyrpipe

Reproducible bioinformatics pipelines in python. Import any Unix tool/command in python.

Python

COVID-19-RNA-Seq-datasets

A repository for sharing information on available COVID-19 RNA-Seq datasets

Python

orfipy

Fast and flexible ORF finder

Python

MetaOmGraph

MetaOmGraph: a workbench for interactive exploratory data analysis of large expression datasets

Java

PLncPRO

A machine learning model for the prediction of lncRNAs (Singh et. al NAR 2017)

Python

TCGA-Data-Analysis

Examples on processing and working with TCGA mutation and RNA-Seq data

csvtoxl

Easily convert csv/tsv to excel (xlsx) taking care of gene names or other data vulnerable to auto conversion by MS-Excel

Java

Human_orphan_genes

A pan-tissue pan-cancer compendium of human orphan genes

Python

COVID-biorxiv

Flexible query for biorxiv and medRxiv COVID-19 collection

Python

covid-quantification

A pipeline to quantify COVD-19 infected RNA-Seq samples

Python

sra-pyutils

Easy SRA metadata

Python

Stat579Project

urmi-21/COVID-DEA

urmi-21

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