tritemio/euroscipy2018_python_optimization

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tritemio/euroscipy2018_python_optimization

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EuroScipy 2018 Tutorial "A tour of python profiling and optimization"

nbrun

Automate execution of Jupyter Notebooks from another Notebook.

jupyter_notebook_beginner_guide

A brief guide to install and run Jupyter/IPython notebooks

Jupyter Notebook

pycorrelate

Fast and accurate cross-correlation over arbitrary time lags. Moved to:

PyBroMo

A simulator for single molecule FRET experiments of freely diffusing particles. Moved to:

FRETBursts

Burst analysis software for smFRET. **Moved to OpenSMFS organization**

pybroom

pybroom, the python's broom to tidy up messy fit results!

nlp_text_generation

Experiments generating text with state-of-the-art deep-learning models (GPT2, Transformer XL, ...)

Jupyter Notebook

notebooks

Some IPython Notebooks

Jupyter Notebook

parquet-pyarrow-pyconit-2022

Jupyter Notebook

euroscipy2018_jupyter_reproducibility

Slides on reproducible Jupyter-based workflow.

Jupyter Notebook

pandas_notes

Notes on using pandas (merge, joins, pivot, stack, string ops, etc...)

Jupyter Notebook

Jupyter-Python-Workshop-STROBE-2018-02-26

Material for Hands-on Python Workshop, STROBE 2018-02-26

Jupyter Notebook

lcos_multispot_pattern

Create a multispot pattern via phase LCOS-SLM. Repository moved to:

Jupyter Notebook

48-pixel-SPAD-crosstalk-analysis

Optical crosstalk in SPAD arrays for high-throughput smFRET

Jupyter Notebook

48-spot-smFRET-PAX-analysis

Data analysis for the 48-spot smFRET-PAX paper

Jupyter Notebook

48spot-PAX-manuscript

ml-notes

Machine Learning Notes

Jupyter Notebook

multispot_paper

Data analysis for Ingargiola et al. PLOS ONE (2017) doi:10.1101/085027

Jupyter Notebook

transfer_convert

Jupyter Notebook

FRETBursts_notebooks

Tutorials and usage examples for FRETBursts software

Jupyter Notebook

reproducible_papers

A curated list of computationally reproducible papers.

polimi_tcspc_16ch

Data analysis for Ingargiola et al. Proc.SPIE 100710Q

Jupyter Notebook

voltagesensing

Data analysis of the voltage-sensing patch-clamp experiment.