traitecoevo/plant.assembly traitecoevo/plant.assembly

  • Stars
    star
    1
  • Language
    R
  • License
    Other
  • Created over 9 years ago
  • Updated 5 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
traitecoevo/plant.assembly
github

traitecoevo

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Assembly code for plant

More Repositories

1

fungaltraits

A dynamic database of fungal trait measurements
R
69
star
2

datastorr

Simple data versioning and distribution
R
67
star
3

plant

Trait-Driven Models of Ecology and Evolution 🌲
C++
53
star
4

rrqueue

R + Redis queues
R
32
star
5

dockertest

Run tests in docker containers
R
31
star
6

taxonlookup

A versioned and dynamically updating taxonomic lookup table for land plants
R
31
star
7

austraits

R package for accessing the AusTraits Plant database
R
19
star
8

austraits.build

Source for AusTraits
R
16
star
9

growthform

Versioned database that includes growth form information for the world's land plants, currently >140,000 species
R
14
star
10

data_versioning

An approach for practical and simple data versioning in R
TeX
10
star
11

phyndr

Match tip and trait data
R
9
star
12

traits.build

Source for the traits.build R package, used to build AusTraits
HTML
8
star
13

modeladequacy

The purpose of this project is to develop an approach to evaluate the fit of continuous trait evolution models and to apply this approach to angiosperm functional trait data.
TeX
7
star
14

standViz

Make 3D plots of individual trees and stands using openGL
R
6
star
15

baad.data

Access data in baad
R
6
star
16

mortality_bci

Tropical tree mortality model using Barro Colorado Island as a case study
R
6
star
17

experimentr

root
R
5
star
18

plant_paper

Paper about plant
TeX
5
star
19

traitfill

Generalises the approach in https://github.com/richfitz/wood
R
5
star
20

versioned_data_template

This is the minimum set of tools to set up and distribute a versioned dataset via an R package
R
5
star
21

litterfitter

Package for fitting and testing alternative models for single cohort litter decomposition data
R
5
star
22

sizedist

C++
4
star
23

phyndr-ms

Manuscript and figures for phyndr paper
TeX
4
star
24

APCalign

R package for accessing, matching and updating species names of Australian flora
R
4
star
25

growth_trajectories

Code for reproducing http://doi.org/10.1101/083451
R
4
star
26

APD

The Australian Plant Traits Dictionary
HTML
4
star
27

multi_trait_succession

Code for reproducing the figures in http://doi.org/10.1073/pnas.1610206114, http://doi.org/10.1101/014605, http://doi.org/10.1111/j.1365-2745.2010.01735.x
C++
4
star
28

callr

Simple interface for calling R
R
3
star
29

austraits_ms

Paper about the austraits database
TeX
3
star
30

sTEP_overlap

R
3
star
31

traitecoevo.github.io

Menu of various R tools and datasets for trait-based ecology and evolution
HTML
3
star
32

traits.build-book

traits-build manual
R
3
star
33

infinitylists

infinitylists allows you to generate place-based species lists for anywhere in Australia, pulling collection data and iNaturalist records from the Atlas of Living Australia.
R
3
star
34

stateliner

Code and documentation for connecting stateline and R
R
2
star
35

austraits-python

2
star
36

bmsma

Bayesian Multilevel Standardised Major Axis models
C++
2
star
37

austraits-api

R
2
star
38

ksi

Finding Distinctive Clades with the Komogorov-Smirnov Importance Statistic
R
2
star
39

smatr

an R package for estimation and inference about allometric lines
R
2
star
40

competition_kernels

🌱 Emergent shapes of trait-based competition functions from resource-based models 🌳🌲🌴
TeX
2
star
41

hmde

Implementation of hierarchical Bayesian longitudinal models to estimate differential equation parameters.
R
2
star
42

Revolve

Adaptive Dynamics toolkit for R
R
1
star
43

colors_in_citizen_science

Data and code that investigate the reliability of color data extracted from citizen science photographs
R
1
star
44

plant_talk

Slides for talk about plant package, for BES webinar on March 1 2016
TeX
1
star
45

remake_baad_example

Example remake workflow using BAAD
R
1
star
46

tree_rings

1
star
47

richness

R
1
star
48

stan_crossval_demo

Example workflow to efficiently run k-fold cross validation using stan
R
1
star
49

mortality_models

1
star
50

reproductive_allocation_kuringgai

Code reproducing papers by Lizzy Wenk on reproductive allocation of plant species In Kuringai National Park
R
1
star
51

drat

Drat repository for our packages
HTML
1
star
52

traits.build-template

An example repository to get you started
R
1
star
53

ausinvertraits.build

Source for Australian Invertebrate Traits Database
R
1
star