traitecoevo/modeladequacy

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Created about 11 years ago
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traitecoevo/modeladequacy

traitecoevo

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The purpose of this project is to develop an approach to evaluate the fit of continuous trait evolution models and to apply this approach to angiosperm functional trait data.

fungaltraits

A dynamic database of fungal trait measurements

datastorr

Simple data versioning and distribution

plant

Trait-Driven Models of Ecology and Evolution 🌲

rrqueue

R + Redis queues

dockertest

Run tests in docker containers

taxonlookup

A versioned and dynamically updating taxonomic lookup table for land plants

austraits

R package for accessing the AusTraits Plant database

austraits.build

Source for AusTraits

growthform

Versioned database that includes growth form information for the world's land plants, currently >140,000 species

data_versioning

An approach for practical and simple data versioning in R

phyndr

Match tip and trait data

traits.build

Source for the traits.build R package, used to build AusTraits

standViz

Make 3D plots of individual trees and stands using openGL

baad.data

Access data in baad

mortality_bci

Tropical tree mortality model using Barro Colorado Island as a case study

experimentr

plant_paper

Paper about plant

traitfill

Generalises the approach in https://github.com/richfitz/wood

versioned_data_template

This is the minimum set of tools to set up and distribute a versioned dataset via an R package

litterfitter

Package for fitting and testing alternative models for single cohort litter decomposition data

sizedist

phyndr-ms

Manuscript and figures for phyndr paper

APCalign

R package for accessing, matching and updating species names of Australian flora

growth_trajectories

Code for reproducing http://doi.org/10.1101/083451

APD

The Australian Plant Traits Dictionary

multi_trait_succession

Code for reproducing the figures in http://doi.org/10.1073/pnas.1610206114, http://doi.org/10.1101/014605, http://doi.org/10.1111/j.1365-2745.2010.01735.x

callr

Simple interface for calling R

austraits_ms

Paper about the austraits database

sTEP_overlap

traitecoevo.github.io

Menu of various R tools and datasets for trait-based ecology and evolution

traits.build-book

traits-build manual

infinitylists

infinitylists allows you to generate place-based species lists for anywhere in Australia, pulling collection data and iNaturalist records from the Atlas of Living Australia.

stateliner

Code and documentation for connecting stateline and R

austraits-python

bmsma

Bayesian Multilevel Standardised Major Axis models

austraits-api

ksi

Finding Distinctive Clades with the Komogorov-Smirnov Importance Statistic

smatr

an R package for estimation and inference about allometric lines

competition_kernels

🌱 Emergent shapes of trait-based competition functions from resource-based models 🌳🌲🌴

hmde

Implementation of hierarchical Bayesian longitudinal models to estimate differential equation parameters.

Revolve

Adaptive Dynamics toolkit for R

colors_in_citizen_science

Data and code that investigate the reliability of color data extracted from citizen science photographs

plant_talk

Slides for talk about plant package, for BES webinar on March 1 2016

remake_baad_example

Example remake workflow using BAAD

tree_rings

richness

stan_crossval_demo

Example workflow to efficiently run k-fold cross validation using stan

plant.assembly

Assembly code for plant

mortality_models

reproductive_allocation_kuringgai

Code reproducing papers by Lizzy Wenk on reproductive allocation of plant species In Kuringai National Park

drat

Drat repository for our packages

traits.build-template

An example repository to get you started

ausinvertraits.build

Source for Australian Invertebrate Traits Database