traitecoevo/datastorr

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Created almost 9 years ago
Updated over 3 years ago

traitecoevo/datastorr

traitecoevo

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Simple data versioning and distribution

fungaltraits

A dynamic database of fungal trait measurements

plant

Trait-Driven Models of Ecology and Evolution 🌲

rrqueue

R + Redis queues

dockertest

Run tests in docker containers

taxonlookup

A versioned and dynamically updating taxonomic lookup table for land plants

austraits

R package for accessing the AusTraits Plant database

austraits.build

Source for AusTraits

growthform

Versioned database that includes growth form information for the world's land plants, currently >140,000 species

data_versioning

An approach for practical and simple data versioning in R

phyndr

Match tip and trait data

traits.build

Source for the traits.build R package, used to build AusTraits

modeladequacy

The purpose of this project is to develop an approach to evaluate the fit of continuous trait evolution models and to apply this approach to angiosperm functional trait data.

standViz

Make 3D plots of individual trees and stands using openGL

baad.data

Access data in baad

mortality_bci

Tropical tree mortality model using Barro Colorado Island as a case study

experimentr

plant_paper

Paper about plant

traitfill

Generalises the approach in https://github.com/richfitz/wood

versioned_data_template

This is the minimum set of tools to set up and distribute a versioned dataset via an R package

litterfitter

Package for fitting and testing alternative models for single cohort litter decomposition data

sizedist

phyndr-ms

Manuscript and figures for phyndr paper

APCalign

R package for accessing, matching and updating species names of Australian flora

growth_trajectories

Code for reproducing http://doi.org/10.1101/083451

APD

The Australian Plant Traits Dictionary

multi_trait_succession

Code for reproducing the figures in http://doi.org/10.1073/pnas.1610206114, http://doi.org/10.1101/014605, http://doi.org/10.1111/j.1365-2745.2010.01735.x

callr

Simple interface for calling R

austraits_ms

Paper about the austraits database

sTEP_overlap

traitecoevo.github.io

Menu of various R tools and datasets for trait-based ecology and evolution

traits.build-book

traits-build manual

infinitylists

infinitylists allows you to generate place-based species lists for anywhere in Australia, pulling collection data and iNaturalist records from the Atlas of Living Australia.

stateliner

Code and documentation for connecting stateline and R

austraits-python

bmsma

Bayesian Multilevel Standardised Major Axis models

austraits-api

ksi

Finding Distinctive Clades with the Komogorov-Smirnov Importance Statistic

smatr

an R package for estimation and inference about allometric lines

competition_kernels

🌱 Emergent shapes of trait-based competition functions from resource-based models 🌳🌲🌴

hmde

Implementation of hierarchical Bayesian longitudinal models to estimate differential equation parameters.

Revolve

Adaptive Dynamics toolkit for R

colors_in_citizen_science

Data and code that investigate the reliability of color data extracted from citizen science photographs

plant_talk

Slides for talk about plant package, for BES webinar on March 1 2016

remake_baad_example

Example remake workflow using BAAD

tree_rings

richness

stan_crossval_demo

Example workflow to efficiently run k-fold cross validation using stan

plant.assembly

Assembly code for plant

mortality_models

reproductive_allocation_kuringgai

Code reproducing papers by Lizzy Wenk on reproductive allocation of plant species In Kuringai National Park

drat

Drat repository for our packages

traits.build-template

An example repository to get you started

ausinvertraits.build

Source for Australian Invertebrate Traits Database