tobiasrausch/vc

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Rank 1,081,285 (Top 22 %)
Language
R
License
BSD 3-Clause "New...
Created almost 7 years ago
Updated 3 months ago

tobiasrausch/vc

tobiasrausch

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A tutorial on structural variant calling for short read sequencing data

alfred

BAM Statistics, Feature Counting and Annotation

wally

Wally: Visualization of aligned sequencing reads and contigs

ATACseq

Analysis Workflow for Assay for Transposase-Accessible Chromatin using sequencing (ATAC-Seq)

lorax

A long-read analysis toolbox for cancer and population genomics

nRex

nRex: Germline and somatic single-nucleotide, short indel and structural variant calling

tenX

rayas

Templated insertion discovery

covid19

SARS-CoV-2 analysis pipeline for short-read, paired-end illumina sequencing

rdxon

Reference-free FASTQ filter for rare germline and somatic variants

repliseq

Repli-Seq analysis pipeline

RNAseq

RNA-Seq processing pipeline

lamp

LAMP testing (Covid screening)

allis

Allele-specific expression

vcfaid

VCFaid: Genotype likelihood based GQ estimation

svcatalog

Human Genetic Structural Variants

coral

Coral: COpy-numbeR ALterations

ml2

Machine Learning

circosplots

Scripts to generate circos plots

workflows

Common Workflow Language

sv

Structural variant calling tutorial using long-reads.

dbg

phaseBam

Phase a BAM file using a phased SNP scaffold

exercise1

t-all

tobiasrausch.github.io

Homepage of Tobias Rausch

indexingtests

pods

Kubernetes (K8s) stuff