Discover timsainb/vocalization-segmentation Open Source project

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Jupyter Notebook
License
MIT License
Created about 5 years ago
Updated over 3 years ago

timsainb

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Simple python algorithms for segmenting animal (songbird, mice) vocalizations into notes and syllables using Dynamic Thresholding and Continuity Filtering.

noisereduce

Noise reduction in python using spectral gating (speech, bioacoustics, audio, time-domain signals)

Jupyter Notebook

1,447

tensorflow2-generative-models

Implementations of a number of generative models in Tensorflow 2. GAN, VAE, Seq2Seq, VAEGAN, GAIA, Spectrogram Inversion. Everything is self contained in a jupyter notebook for easy export to colab.

Jupyter Notebook

996

Tensorflow-MultiGPU-VAE-GAN

A single jupyter notebook multi gpu VAE-GAN example with latent space algebra and receptive field visualizations.

Jupyter Notebook

441

python_spectrograms_and_inversion

Spectrograms, MFCCs, and Inversion Demo in a jupyter notebook

Jupyter Notebook

164

ParametricUMAP_paper

Parametric UMAP embeddings for representation and semisupervised learning. From the paper "Parametric UMAP: learning embeddings with deep neural networks for representation and semi-supervised learning" (Sainburg, McInnes, Gentner, 2020).

Jupyter Notebook

149

GAIA

Generative Adversarial Interpolative Autoencoder (GAIA) is a Generative Adversarial Network (GAN) made up of Autoencoders (AE) trained explicitly on interpolations to promote convexity and better latent interpolations.

Jupyter Notebook

AVGN

A generative network for animal vocalizations. For dimensionality reduction, sequencing, clustering, corpus-building, and generating novel 'stimulus spaces'. All with notebook examples using freely available datasets.

Jupyter Notebook

avgn_paper

Latent and generative models of animal vocalizations for songbirds, mice, primates, humans, cetaceans, etc.

Jupyter Notebook

tensorflow-2-feature-visualization-notebooks

Feature and class visualization with deep neural networks in tensorflow. Contains deepdream, style transfer, receptive field visualization, convolutional filter visualization, etc.

Jupyter Notebook

birdbrain

A library for viewing songbird brain atlases (European starling, Canary, Zebra finch, Pigeon, Mustached bat)

Jupyter Notebook

curriculum_vitae

My Curriculum Vitae, generated in Python via Jinja from JSON fields into HTML. http://timsainburg.com/pages/cv.html

HTML

postdoc_salaries

Jupyter Notebook

automutualinformation

Auto Mutual Information (Sequential Mutual Information) for temporal data.

Jupyter Notebook

neuroethology_paper_2021

for 2021 current opinions paper

Jupyter Notebook

ParallelsBirdsongLanguagePaper

Code for the Paper "Parallels in the sequential organization of birdsong and human speech." Nature Communications (2019)

Jupyter Notebook

graph_research_notes

Graphing my grad school research notes using networkx and sigma.js

Jupyter Notebook

kinectacq

Acquisition from a Kinect rig

Jupyter Notebook

visualize_wordpress_posts

Visualizing Wordpress Posts using D3 forced directed networks

HTML

multicamera_acquisition

Synchronized machine vision acquisition across multiple cameras using an arduino (Supports FLIR and Basler)

Jupyter Notebook

LeabraExample

LongRangeSequentialOrgPaper

Jupyter Notebook

spikesorting-graph-examples

A quick example spikesorting graph to show the spikeinterface team

Jupyter Notebook

example_r_colab_project

Just a tiny example project for running your R code on colab

Jupyter Notebook

kinect_acquisition_template

Python

timsainb/vocalization-segmentation

timsainb

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