tillahoffmann/shedding

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Python
Created about 4 years ago
Updated 4 months ago

tillahoffmann/shedding

tillahoffmann

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Uncertainties surrounding the concentration of viral RNA fragments in the faeces of individuals infected with SARS-CoV-2 poses a major challenge for wastewater-based surveillance of Covid-19. This repository serves to collate data from quantitative studies on RNA load in faecal samples to constrain the shedding distribution.

obsidian-jupyter

obsidian-file-include

time_series

Jupyter Notebook

asymmetric_kde

Density estimation using asymmetric kernels.

universal_tensorflow_image

Develop tensorflow models with or without a GPU accelerator using the same Docker image. 🥳

wastewater-catchment-areas

7,537 wastewater catchment areas in the Great Britain covering more than 95% of the population.

Jupyter Notebook

cyfunc

Easy universal functions for numpy in cython.

sphinx-stan

Sphinx domain for Stan, the probabilistic programming language

testax

Jit-able runtime assertions for JAX in NumPy style.

localscope

Restrict the scope of functions for reproducible code execution and peace of mind.

reference-models

template

A simple template for reproducible research.

version-wizard

gptools

Gaussian processes on graphs and lattices in Stan and pytorch.

python_skeleton

Skeleton for python projects using conda, py.test and TravisCI.

util

Code snippets for statistics and machine learning.

slides

Create stunning presentations using markdown powered by reveal.js.

ifnt

Execute runtime assertions, indexing checks, and more if `jax` code is not traced.

datatrail-python

precompiled-cmdstan

Precompiled cmdstan for use in Read the Docs and elsewhere.

vscode-snakeviz

common

idxhound

🐶 Track indices across one or more numpy selections.

variational_bayes