thomasp85/circosScripts

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Perl
Created over 12 years ago
Updated about 12 years ago

thomasp85/circosScripts

thomasp85

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Perl scripts to automate circos plots

patchwork

The Composer of ggplots

gganimate

A Grammar of Animated Graphics

ggraph

Grammar of Graph Graphics

ggforce

Accelerating ggplot2

tidygraph

A tidy API for graph manipulation

ggplot2_workshop

Material for "Drawing Anything with ggplot2" workshop

lime

Local Interpretable Model-Agnostic Explanations (R port of original Python package)

scico

Palettes for R based on the Scientific Colour-Maps

tweenr

Interpolate your data

fiery

A flexible and lightweight web server

shinyFiles

A shiny extension for server side file access

ggfx

Filters and Shaders for 'ggplot2'

densityClust

Clustering by fast search and find of density peaks

farver

High Performance Colourspace Manipulation in R

particles

A particle simulation engine based on a port of d3-force

transformr

Smooth Polygon Transformations

ambient

A Generator of Multidimensional Noise

euclid

Exact Computation Geometry Framework Based on 'CGAL'

routr

Routing of Web Requests in R

hierarchicalSets

Scalable Set Visualization using Hierarchies

Hr

Easy Access to Uppercase H

reqres

Powerful classes for http requests and responses

curry

Partial Function Application with %<%, %-<%, and %><%

FindMyFriends

Fast alignment-free pangenome creation and exploration

pipeplotter

Syntactic ggplot2 Sugar for a Tidy World

fawkes

An R Interface to the AxiDraw plotter

pearls

Operations on Lists of Data Frames

PanVizGenerator

Create your own PanViz visualizations

ink

The Modern, High-Performant, Graphic Device for R

ggplot2_mechanics

The Mechanics of ggplot2

plotting_benchmark

Investigating R graphics performance

grid

personal devel version of grid

PanViz

D3 based visualisation for comparative genomics

boundaries

Algorithms for Working With and Modifying Polygon Boundaries

data_imaginist

data_imaginist source

nanodev

Graphic Devices for R based on NanoVG

MSGFgui

A gui overlay and extension for MSGFplus

orion

Spatial Searching for Euclid

web_dev_in_R

Web Development for R Users

heroku-fiery-demo

A demo fiery application for deployment on Heroku

unmeshy

A Vector Based 3D Renderer

MSsary

Mass spectrometry data in R

RcppSNAP

'Rcpp' Integration for the SNAP Network Library

tidy_graph_analysis

Tidy Network Analysis in R

polyclid

Polygon Support for Euclid

mzID

An mzIdentML parser for R

MSGFplus

An MSGF+ interface for R

thomasp85.github.io

The source for data-imaginist.com

mvpcran

CRAN on a stick

shady

Compile and Execute Shaders from R

anomaly

Detecting those outliers

firedock

Dockerfiles for fiery

phd_dissertation

Pangenome Tools for Rapid, Large-Scale Analysis of Bacterial Genomes

d3Disco

A showcase for Shiny and D3 integration

pepmaps

R package for quantitative peptidomics

masochist

For some reason I’m doing all of this from my phone

firedock_test

Biotools

Scripts for CMG-Biotools

firesafety

Security for fiery apps

CHtools

A list of diverse functions for CH