• Stars
    star
    1
  • Language
    R
  • License
    GNU General Publi...
  • Created about 3 years ago
  • Updated about 2 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Scripts needed to reproduce phylodynamic analyses from Nadeau et al. 2021.

More Repositories

1

sicm

Unofficial HTML version of Sussman and Wisdom's "Structure and Interpretation of Classical Mechanics"
HTML
81
star
2

PirateScope

wxPython oscilloscope client for dangerousprototypes.com's Bus Pirate.
Python
43
star
3

icytree

Browser-based utility for phylogenetic tree visualisation.
JavaScript
37
star
4

MultiTypeTree

BEAST 2 package which provides support for multi-type trees: phylogenetic trees on structured populations.
Java
22
star
5

MASTER

A versatile simulation engine for stochastic population dynamics models.
Java
22
star
6

bacter

Bacterial phylogenetics in BEAST 2.
Java
17
star
7

feast

Tasty additions to BEAST 2
Java
11
star
8

BDMM-Prime

Multi-type birth-death-sampling modelling for BEAST 2.
Java
6
star
9

BuildRoster

Employee roster generator.
Python
5
star
10

TimeTrees.jl

Phylogenetic tree type for julia
Julia
5
star
11

JsonBrowse

Basic graphical JSON object heirarchy browser
Java
5
star
12

remaster

High-fidelity stochastic tree simulation for BEAST 2.
Java
4
star
13

bioinf702_lectures

Lecture slides for bioinf702
HTML
3
star
14

BayesianMCMCLectures

Lectures I gave for a Bayesian statistics minicourse at the University of Hohenheim.
JavaScript
3
star
15

dvtm

Fork of dvtm (http://www.brain-dump.org/projects/dvtm) that provides simple runtime configuration of key bindings and other basic options via an ini-like config file.
C
3
star
16

EpiInf

BEAST 2 package for performing inference on epidemiological parameters using the exact likelihood.
Jupyter Notebook
3
star
17

h5shell

Command shell interface for HDF5 scientific data files.
Python
2
star
18

talks

Repository for my web-based talks
HTML
2
star
19

HamiltonianTreeDynamics

Rough visualisation of classical mechanics in tree space
Processing
2
star
20

PhotoDist

Estimate distances from stereo photo pairs.
Java
1
star
21

mEpiLabWorkshop

One day BEAST 2 workshop delivered to mEpiLab
JavaScript
1
star
22

pitchfork

Bayesian phylogenetic inference under models supporting explicit polytomies.
Java
1
star
23

HK_2018_Slides

Lecture for C3BI workshop in HK, 2018
JavaScript
1
star
24

ModelSelection

BEAST 2 code for simple model selection.
Java
1
star
25

R0-manuscript-materials

Supplemental files and data for the manuscript "Estimates of outbreak-specific SARS-CoV-2 epidemiological parameters from genomic data".
R
1
star
26

beast.m4

Some basic m4 macros for BEAST 2 XMLs
M4
1
star
27

HK_2018_MiniProject

Instructions and data for student mini-project at the 2018 C3BI course on molecular phylogenetics.
Python
1
star
28

BSLoader

Easily load R scripts provided by BEAST 2 packages.
R
1
star
29

icylog

Browser-based BEAST log file analyzer.
JavaScript
1
star
30

ceskykrumlov2018_lectures

Talks presented at the 2018 Workshop on Population and Speciation Genomics, Cesky Krumlov
JavaScript
1
star