telatin/bioinfo

Stars
2
Language
Perl
License
MIT License
Created over 6 years ago
Updated about 4 years ago

telatin/bioinfo

telatin

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Misc scripts for routine bioinformatics tasks. Plus some Perl modules.

seqfu2

🚀 seqfu - Sequece Fastx Utilities

bamtocov

🏔 coverage extraction from BAM/CRAM files, supporting targets 📊

covtobed

⛰ covtobed | Convert the coverage track from a BAM file into a BED file

gan

📜 the Great Automatic Nomenclator — The Next Million Names for Archaea and Bacteria

nextflow-example

A simple DSL2 workflow: tutorial

learn_bash

Toy files and training material to introduce Linux to molecular biologists

covtools

porfast

⚡pORFast - Paired-end ORF Fast extraction

getreads

qax

Qiime2 Artifact eXtractor

cdhit-parser

singularities

Scripts and notes for singularity containers used for bioinformatics analyses

cleanup

Nextflow pipeline to preprocess metagenomics reads

FASTX-Reader

[FASTX::Reader] Perl module to parse FASTQ files, without depending on BioPerl

nim-for-bioinformatics

Notes on the Nim programming language, with specific examples for bioinformatic applications

nextseq500-tools

Tools to deal with Illumina NextSeq500 sequences

nim-stuff

vsearch_example

An example of 16S analysis using VSEARCH

tii

Like 'tee', but for PasteBin.com

learnperl

Scripts used for Bash/Perl training sessions

FASTX-Abi

Perl module to convert Sanger traces (chromatograms) to FASTQ

lotus-tutorial

Tutorial on 16S analysis using the Lotus pipeline

qiime2tools

Repository of utilities for Qiime2. Experimental

factotus

The OTUs Factotum

scampi

Archived PhD thesis material from 2012

nf-core-virome

proch-n50

Perl Module and Utility to calculate N50

praken

Peptide k-mer analysis

amplicorius

AmpliCoriuS - Amplicon Core Scripts

ml-workshop-2023

Machine Learning with Python

Jupyter Notebook

telatin.github.io