Discover tdhock/PeakSegOptimal Open Source project

Fast, weighted ROC curves

WeightedROC

mclapply-memory

Why does mclapply take so much memory?

penaltyLearning

Supervised machine learning for changepoint detection

Named capture regular expressions for text parsing and data reshaping

interactive-tutorial

useR 2016 tutorial on "Understanding and creating interactive graphics"

ggplotly

cs499-spring2019

animint-paper

Learn how to create animated interactive ggplots using the animint2 R package

animint-book

PeakSegPipeline

Supervised machine learning pipeline for peak calling in ChIP-seq data

cs499-spring2020

regex-tutorial

Tutorial on named capture regular expressions in R and Python

An R package for named capture regular expressions

namedCapture

SegAnnDB

Segmentation and Annotation DataBase (interactive DNA copy number analysis using supervised machine learning)

when-c

mmit-paper

cs470-570-spring-2021

2023-08-artificial-intelligence

Supervised segmentation for jointly finding peaks in several ChIP-seq samples

PeakSegJoint

cs470-570-spring-2023

Support vector machines for ranking and comparing

binsegRcpp

rankSVMcompare

PeakError

2023-res-baz-az

2023 Research Bazaar Arizona, Intro to Deep Learning in R

2020-yiqi-summer-school

record GitHub R package versions

cs105-205-305-fall-2022

requireGitHub

cs499-599-fall-2021

PeakSegDisk

Disk-Based Constrained Optimal Segmentation For Peak Detection in Huge Genomic Data

C++

aft-poster

Accelerated failure time models poster

Breakpoint annotation model smoothing

neuroblastoma-data

bams

2023-08-deep-learning

Regular expression vectors

revector

mlr3resampling

Resampling algorithms for mlr3 framework in R

atime

Asymptotic timing

montreal-velos

tutorials

List of tutorials

dotfiles

animint-examples

Big data sets to illustrate animint

binseg

C++

cs599-fall2019

animint-tutorial

temperature-sensor

Data visualization for communauto price comparison

communauto-viz

RMTL2018

Convert inline comments and examples to Rd documentation files

inlinedocs

r-devel-emails

cs570-spring-2022

2023-10-LatinR-data.table

cs305exam_fall22

PeakSeg-paper

cs499-599-fall-2020

Reproducible research works_with_R

aum

works-poster

cs499-599-fall-2022

LOPART

peak-summits

Functional pruning optimal partioning algorithm for PeakSeg constrained segmentation model

tree-canopy

feature-learning-benchmark

PeakSegFPOP-paper

datatable-foverlaps

benchmarking foverlaps

pepseq-paper

plotMakefile

min-aup-paper

changepoint-data-structure

JSS paper about iregnet R package

max-generalized-auc

2023-08-unsupervised-learning

graphics-tutorial

iregnet-paper

functional-pruning-theory

read heartbeat mp3 and viz peak model of amplitude

heartbeat

testthatQuantity

Record times for unit tests

slurm

R functions for running/parsing slurm commands

ecg-labels

Measure time and memory usage of R code

memtime

namedCapture-article

2024-08-data-bases