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tellurium
Python Environment for Modeling and Simulating Biological Systemsantimony
libOmexMeta
libOmexMeta is a library aimed at providing developer-level support for reading, writing, editing and managing semantic annotations for biosimulation models.AMAS
AMAS (Automatic Model Annotation System): (currently) predicting annotations of species and reactions of models in SBML format.SBbadger
teUtils
Tellurium Utilitieslibroadrunner-deps
Dependencies for libroadrunnersidewinder
A client side web application for building and simulating of biological reactions based on SBML.libsbml-draw
Reads in an SBML file, and displays the network by generating a layout or using an existing layout. The SBML layout info can be saved to a new file.IridiumSimulator
Interactive desktop simulator for systems biologylibSBMLVisual
libSBNW is a network viewer which supports autolayout of reaction networks and uses libSBML for reading/writing models.ModelingTutorial
MPA 2023 Reproducibility + Tellurium Workshoprrplugins
Plugins for Telluirumreproducible-biomodel-case-study
Reproducible case studies from BioModelstemp-biomodels
Temporary place for coordination of updating existing Biomodelsphrasedml
Git mirror of https://sourceforge.net/projects/phrasedml/network-modeling-summer-school-2021
ReproduciblePaper
libxml2
rr-libstruct
sedml2py
SedML to Python converterSBviper
Unit tests for models in systems biologySBstoat
Parameter optimization using TelluriumSRES
tellurium-notebooks
Notebook Examples for TelluriumInteractiveModels
Models and simulator for Interactive modeling site: https://sites.google.com/view/interactive-modeling/homeBRSindy
Generalized Bayesian Reactive Sindy AlgorithmpySBML2Matlab
makesbml
Simple site to convert antimony to sbmlfrequencyResponse
Computes frequency response for a SBML modellibantimonyjs
JavaScript version of the antimony library to support human-readable, human-writable modular model definition language.vscode-antimony
Extensions for Antimony development in Visual Studio Code.Love Open Source and this site? Check out how you can help us