swvanderlaan/A_Practical_Primer_in_Human_Complex_Genetics_CoCalc

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Created over 4 years ago
Updated 8 months ago

swvanderlaan/A_Practical_Primer_in_Human_Complex_Genetics_CoCalc

swvanderlaan

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A Practical Primer in Human Complex Genetics

GWASToolKit

A collection of scripts to run GWAS, regional, gene-oriented, or per-variant analyses.

PGSToolKit

A toolkit to calculate polygenic scores using PLINK2, PRS-CS, RapidoPGS, or PRSice2.

MetaGWASToolKit

A ToolKit to perform a Meta-analysis of Genome-Wide Association Studies

QTLToolKit

A workflow based on QTLtools to run cis- and trans-QTL analyses.

GBASToolKit

A ToolKit to perform gene-based association studies using VEGAS or MAGMA

fastQTLToolKit

fastQTL analysis of methylation and expression data

2016_jacc_27561768_vanderlaan_sw_cystatinc

Cystatin C and Cardiovascular Disease: A Mendelian Randomization Study.

HerculesToolKit

"A collection of scripts that make heavy 'omics' work a bit lighter"

qklearn

Tools for Parallelized Machine Learning using scikit-learn on a qsub-based High-Performance Cluster architecture

slideEMask

slideEMask: masking the areas without tissue using an image entropy filer.