sunericd/dynamicviz

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Jupyter Notebook
License
MIT License
Created almost 3 years ago
Updated over 1 year ago

sunericd/dynamicviz

sunericd

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TISSUE

TISSUE (Transcript Imputation with Spatial Single-cell Uncertainty Estimation) provides tools for estimating well-calibrated uncertainty measures for gene expression predictions in single-cell spatial transcriptomics datasets and utilizing them in downstream analyses

dynamic-visualization-of-high-dimensional-data

Jupyter notebooks and Python scripts associated with experiments and analyses presented in "Dynamic visualization of high-dimensional data" by Sun et al. (2022).

Jupyter Notebook

svz_singlecell_aging_clocks

SPRITE

Spatial Propagation and Reinforcement of Imputed Transcript Expression

tissue-figures-and-analyses

Jupyter notebooks and scripts for generating data and figures associated with the TISSUE manuscript

Jupyter Notebook

dnn-illusion

Jupyter Notebook

sprite-figures-and-analyses

Repository containing notebooks and scripts associated with SPRITE figures and analyses

Jupyter Notebook

optimal-control-of-aging-in-complex-networks

Jupyter Notebook

physiological-aging-rates

Jupyter Notebook

ISTools