stjude/fqlib

Stars
16
Rank 1,311,288 (Top 26 %)
Language
Rust
License
Apache License 2.0
Created over 6 years ago
Updated over 3 years ago

stjude/fqlib

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Library for manipulating Illumina generated FastQ files

learngenomics.dev

A guided, intuitive introduction to genomics for software engineers. Curated by the community.

ROSE

ROSE: RANK ORDERING OF SUPER-ENHANCERS

CICERO

CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.

ChIPseqSpikeInFree

A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone Modifications

RNAIndel

Somatic indel discovery tool for tumor RNA-Seq data.

proteinpaint

Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.

cis-x

Search for activating regulatory variants in the tumor genome

indelPost

Python library for simple and complex indels.

PrimerTK

A toolkit to design standard primers, multiplexed primers, and primers around SV's

punctatools

Detection, colocalization, and quantification of spots / puncta

Jupyter Notebook

DeepBrainIPP

Automated Brain Structures Segmentation Framework

Episomizer

Constuct Extrachromosomal Circular DNA using Whole Genome Sequencing Data

fuzzion2

fuzzy fusion finder

seaseq

Abraham's lab - ChipSeq Pipeline

XenoCP

A cloud-based tool for mouse read cleansing in xenograft samples

teltale

Compute telomeric read fractions in a BAM file.

RNApeg

RNA junction finder

sjcloud-data-transfer-app

Application to securely upload data to and download data from St. Jude Cloud Platform.

TALL-example

ChIP-Seq

doCNA

WARDEN

Source code for the WARDEN DNAnexus apps

sjcb_python_utils

St Jude Computational Biology Python utility functions