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learngenomics.dev
A guided, intuitive introduction to genomics for software engineers. Curated by the community.ROSE
ROSE: RANK ORDERING OF SUPER-ENHANCERSCICERO
CICERO: a versatile method for detecting complex and diverse driver fusions using cancer RNA sequencing data.ChIPseqSpikeInFree
A Spike-in Free ChIP-Seq Normalization Approach for Detecting Global Changes in Histone ModificationsRNAIndel
Somatic indel discovery tool for tumor RNA-Seq data.fqlib
Library for manipulating Illumina generated FastQ filesproteinpaint
Data visualization and analysis framework focused on phenotype-molecular data integration at cohort level.cis-x
Search for activating regulatory variants in the tumor genomeindelPost
Python library for simple and complex indels.PrimerTK
A toolkit to design standard primers, multiplexed primers, and primers around SV'spunctatools
Detection, colocalization, and quantification of spots / punctaDeepBrainIPP
Automated Brain Structures Segmentation FrameworkEpisomizer
Constuct Extrachromosomal Circular DNA using Whole Genome Sequencing Datafuzzion2
fuzzy fusion finderseaseq
Abraham's lab - ChipSeq PipelineXenoCP
A cloud-based tool for mouse read cleansing in xenograft samplesteltale
Compute telomeric read fractions in a BAM file.RNApeg
RNA junction findersjcloud-data-transfer-app
Application to securely upload data to and download data from St. Jude Cloud Platform.TALL-example
doCNA
WARDEN
Source code for the WARDEN DNAnexus appssjcb_python_utils
St Jude Computational Biology Python utility functionsLove Open Source and this site? Check out how you can help us