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oneliners
Useful bash one-liners for bioinformatics.annotables
R data package for annotating/converting Gene IDsqqman
An R package for creating Q-Q and manhattan plots from GWAS resultsbiorecap
Retrieve and summarize bioRxiv preprints with a local LLM using ollamatwitterchive
Archive and analyze results from a Twitter search (**no longer maintained**)adapters
Adapters for trimmingsolarplot
Mitochondrial Solar Plotmergelanes
Merge fastq files split over laneskgp
1000 Genomes Project Metadata R Packagemsigdf
Molecular Signatures Database (MSigDB) in a data framehcop
HGNC Comparison of Orthology Predictions (HCOP)deseq-to-fgsea
devnotes
Random programming notes and orphan scriptsworkshops
Biological Data Science Workshopscovcalc
Coverage / read count calculator for sequencing experimentsdocker101
slimbioinfo
Lightweight Alpine-based Docker images for common bioinformatics toolsTverse
Meta package that installs my most commonly used packagesalpinist
Alpine Linux image with R, a subset of Tidyverse packages, and domain-specific tools for genomic data manipulation and analysis.trailprofile
Charlottesville Area Trail Profilesmonthsheets
Tmisc
Miscellaneous utility functions for data manipulation, data tidying, and working with gene expression data and biological sequence data.dstt-rmd
CSTE DSTT RMarkdown demorstudio-snippets
My custom RStudio snippetsrmarkdown-crossreferences
Cross-reference figures and tables using plain RMarkdownrpdd
R package Docker demopipebox
Bioinformatics pipeline in a box (demonstration containerizing workflows with Docker)drawmydata
A webpage for teaching that lets you make a dataset by clicking in a blank scatterplotpairedends
Paired Ends Genomicsshc
shc - Generic shell script compilergi2017software
Software from GI2017execorder
string2dna
R package to encode/decode strings as nucleotide sequencesLove Open Source and this site? Check out how you can help us