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oneliners
Useful bash one-liners for bioinformatics.annotables
R data package for annotating/converting Gene IDsqqman
An R package for creating Q-Q and manhattan plots from GWAS resultsbiorecap
Retrieve and summarize bioRxiv preprints with a local LLM using ollamatwitterchive
Archive and analyze results from a Twitter search (**no longer maintained**)adapters
Adapters for trimmingsolarplot
Mitochondrial Solar Plotmergelanes
Merge fastq files split over laneskgp
1000 Genomes Project Metadata R Packagemsigdf
Molecular Signatures Database (MSigDB) in a data framehcop
HGNC Comparison of Orthology Predictions (HCOP)deseq-to-fgsea
devnotes
Random programming notes and orphan scriptsworkshops
Biological Data Science Workshopscovcalc
Coverage / read count calculator for sequencing experimentsdocker101
slimbioinfo
Lightweight Alpine-based Docker images for common bioinformatics toolsTverse
Meta package that installs my most commonly used packagesalpinist
Alpine Linux image with R, a subset of Tidyverse packages, and domain-specific tools for genomic data manipulation and analysis.trailprofile
Charlottesville Area Trail Profilesom..bcftools
outsider-module: bcftoolsmonthsheets
Tmisc
Miscellaneous utility functions for data manipulation, data tidying, and working with gene expression data and biological sequence data.dstt-rmd
CSTE DSTT RMarkdown demorstudio-snippets
My custom RStudio snippetsrmarkdown-crossreferences
Cross-reference figures and tables using plain RMarkdownrpdd
R package Docker demopipebox
Bioinformatics pipeline in a box (demonstration containerizing workflows with Docker)drawmydata
A webpage for teaching that lets you make a dataset by clicking in a blank scatterplotpairedends
Paired Ends Genomicsshc
shc - Generic shell script compilerexecorder
string2dna
R package to encode/decode strings as nucleotide sequencesLove Open Source and this site? Check out how you can help us