stephenturner/biorecap stephenturner/biorecap

  • Stars
    star
    36
  • Rank 735,472 (Top 15 %)
  • Language
    R
  • License
    Other
  • Created 4 months ago
  • Updated 3 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
stephenturner/biorecap
github

stephenturner

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Retrieve and summarize bioRxiv preprints with a local LLM using ollama

More Repositories

1

oneliners

Useful bash one-liners for bioinformatics.
1,835
star
2

annotables

R data package for annotating/converting Gene IDs
R
160
star
3

qqman

An R package for creating Q-Q and manhattan plots from GWAS results
HTML
152
star
4

twitterchive

Archive and analyze results from a Twitter search (**no longer maintained**)
R
33
star
5

adapters

Adapters for trimming
R
29
star
6

solarplot

Mitochondrial Solar Plot
R
25
star
7

mergelanes

Merge fastq files split over lanes
Shell
18
star
8

kgp

1000 Genomes Project Metadata R Package
R
18
star
9

msigdf

Molecular Signatures Database (MSigDB) in a data frame
R
16
star
10

hcop

HGNC Comparison of Orthology Predictions (HCOP)
R
14
star
11

deseq-to-fgsea

HTML
9
star
12

devnotes

Random programming notes and orphan scripts
Shell
8
star
13

workshops

Biological Data Science Workshops
CSS
7
star
14

covcalc

Coverage / read count calculator for sequencing experiments
R
6
star
15

docker101

Dockerfile
4
star
16

slimbioinfo

Lightweight Alpine-based Docker images for common bioinformatics tools
Dockerfile
4
star
17

Tverse

Meta package that installs my most commonly used packages
R
4
star
18

alpinist

Alpine Linux image with R, a subset of Tidyverse packages, and domain-specific tools for genomic data manipulation and analysis.
Dockerfile
4
star
19

trailprofile

Charlottesville Area Trail Profiles
HTML
3
star
20

om..bcftools

outsider-module: bcftools
R
3
star
21

monthsheets

R
3
star
22

Tmisc

Miscellaneous utility functions for data manipulation, data tidying, and working with gene expression data and biological sequence data.
R
2
star
23

dstt-rmd

CSTE DSTT RMarkdown demo
HTML
1
star
24

rstudio-snippets

My custom RStudio snippets
1
star
25

rmarkdown-crossreferences

Cross-reference figures and tables using plain RMarkdown
1
star
26

rpdd

R package Docker demo
Shell
1
star
27

pipebox

Bioinformatics pipeline in a box (demonstration containerizing workflows with Docker)
R
1
star
28

drawmydata

A webpage for teaching that lets you make a dataset by clicking in a blank scatterplot
HTML
1
star
29

pairedends

Paired Ends Genomics
CSS
1
star
30

shc

shc - Generic shell script compiler
C
1
star
31

gi2017software

Software from GI2017
CSS
1
star
32

execorder

1
star
33

string2dna

R package to encode/decode strings as nucleotide sequences
R
1
star