stephenturner/Tverse stephenturner/Tverse

  • Stars
    star
    4
  • Rank 3,304,323 (Top 66 %)
  • Language
    R
  • License
    Other
  • Created over 2 years ago
  • Updated 11 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
stephenturner/Tverse
github

stephenturner

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Meta package that installs my most commonly used packages

More Repositories

1

oneliners

Useful bash one-liners for bioinformatics.
1,835
star
2

annotables

R data package for annotating/converting Gene IDs
R
160
star
3

qqman

An R package for creating Q-Q and manhattan plots from GWAS results
HTML
152
star
4

biorecap

Retrieve and summarize bioRxiv preprints with a local LLM using ollama
R
36
star
5

twitterchive

Archive and analyze results from a Twitter search (**no longer maintained**)
R
33
star
6

adapters

Adapters for trimming
R
29
star
7

solarplot

Mitochondrial Solar Plot
R
25
star
8

mergelanes

Merge fastq files split over lanes
Shell
18
star
9

kgp

1000 Genomes Project Metadata R Package
R
18
star
10

msigdf

Molecular Signatures Database (MSigDB) in a data frame
R
16
star
11

hcop

HGNC Comparison of Orthology Predictions (HCOP)
R
14
star
12

deseq-to-fgsea

HTML
9
star
13

devnotes

Random programming notes and orphan scripts
Shell
8
star
14

workshops

Biological Data Science Workshops
CSS
7
star
15

covcalc

Coverage / read count calculator for sequencing experiments
R
6
star
16

docker101

Dockerfile
4
star
17

slimbioinfo

Lightweight Alpine-based Docker images for common bioinformatics tools
Dockerfile
4
star
18

alpinist

Alpine Linux image with R, a subset of Tidyverse packages, and domain-specific tools for genomic data manipulation and analysis.
Dockerfile
4
star
19

trailprofile

Charlottesville Area Trail Profiles
HTML
3
star
20

om..bcftools

outsider-module: bcftools
R
3
star
21

monthsheets

R
3
star
22

Tmisc

Miscellaneous utility functions for data manipulation, data tidying, and working with gene expression data and biological sequence data.
R
2
star
23

dstt-rmd

CSTE DSTT RMarkdown demo
HTML
1
star
24

rstudio-snippets

My custom RStudio snippets
1
star
25

rmarkdown-crossreferences

Cross-reference figures and tables using plain RMarkdown
1
star
26

rpdd

R package Docker demo
Shell
1
star
27

pipebox

Bioinformatics pipeline in a box (demonstration containerizing workflows with Docker)
R
1
star
28

drawmydata

A webpage for teaching that lets you make a dataset by clicking in a blank scatterplot
HTML
1
star
29

pairedends

Paired Ends Genomics
CSS
1
star
30

shc

shc - Generic shell script compiler
C
1
star
31

gi2017software

Software from GI2017
CSS
1
star
32

execorder

1
star
33

string2dna

R package to encode/decode strings as nucleotide sequences
R
1
star