stegmaierj/DiffusionModelsForImageSynthesis

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Apache License 2.0
Created almost 2 years ago
Updated 7 months ago

stegmaierj/DiffusionModelsForImageSynthesis

stegmaierj

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Repository for the publication "Denoising Diffusion Probabilistic Models for Generation of Realistic Fully-Annotated Microscopy Image Data Sets"

Cellpose3D

3D Extension of the Cellpose Algorithm by Stringer et al., 2021.

CellCycleGAN

Data synthesis framework for 2D microscopy images using statistical shape models and GANs.

CellSynthesis

3D Fluorescence Microscopy Data Synthesis for Segmentation and Benchmarks

CellShapeAnalysis

Collection of methods used for segmentation and quantitative analysis of gastrulation in Drosophila embryos that were recorded using light-sheet microscopy.

MultiViewFusion

Multiview Deconvolution and Fusion using Semi- and Self-Supervised Generative Adversarial Networks

LiveCellMiner

Extension to the SciXMiner MATLAB toolbox used for quantitative analysis of chromatin decondensation

PrimordiumSegmentation

DropletAnalysis

Droplet Analysis Software Authors: Johannes Stegmaier, Maximilian Grösche, Christof Niemeyer, Ralf Mikut

XPIWITPipelines

Collection of XPIWIT Pipelines

ImageDiversification

Jupyter Notebook

ColonyCounter

MATLAB GUI for Semi-Automatic Quantification of Bacteria Colonies

HarmonicNet

Spherical Harmonics for Shape-Constrained 3D Cell Segmentation

CellTracking