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DiffusionModelsForImageSynthesis
Repository for the publication "Denoising Diffusion Probabilistic Models for Generation of Realistic Fully-Annotated Microscopy Image Data Sets"Cellpose3D
3D Extension of the Cellpose Algorithm by Stringer et al., 2021.CellSynthesis
3D Fluorescence Microscopy Data Synthesis for Segmentation and BenchmarksCellShapeAnalysis
Collection of methods used for segmentation and quantitative analysis of gastrulation in Drosophila embryos that were recorded using light-sheet microscopy.MultiViewFusion
Multiview Deconvolution and Fusion using Semi- and Self-Supervised Generative Adversarial NetworksLiveCellMiner
Extension to the SciXMiner MATLAB toolbox used for quantitative analysis of chromatin decondensationPrimordiumSegmentation
DropletAnalysis
Droplet Analysis Software Authors: Johannes Stegmaier, Maximilian Grösche, Christof Niemeyer, Ralf MikutXPIWITPipelines
Collection of XPIWIT PipelinesImageDiversification
ColonyCounter
MATLAB GUI for Semi-Automatic Quantification of Bacteria ColoniesHarmonicNet
Spherical Harmonics for Shape-Constrained 3D Cell SegmentationCellTracking
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