ssi-dk/GenEpi-BioTrain_Virtual_Training_7

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ssi-dk/GenEpi-BioTrain_Virtual_Training_7

ssi-dk

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All data used in the GenEpi-BioTrain Virtual Training 7 session on march 19-20, 2024

CD-MRG-metabolomics_summerschool_2023

This repository contains teaching material for the 3rd International Summer School on Non-Targeted Metabolomics Data Mining for Biomedical Research

Jupyter Notebook

serum_readfilter

bifrost

SCDB

R package for maintaining data bases with slowly-changing-dimensions

miniLIMS

LIMS in development to be used in NGS facility

bifrost-archive

Bacterial Surveillance platform, focused on QC in Denmark

microreact_integration

Python code for integrating with Microreact

diseasystore

R package that provides a feature store tailored towards disease modelling

diseasy

CD-MRG-PlatePlanner

Python package to create multi-well plate layouts for specimen sample data. Automatically distributes quality control samples according to scheme in config file.

sofi_core

aeddo

Automated and Early Detection of Disease Outbreaks

AEF-DDF

covid19_wgs_validation

Protocol and pipeline for montering technical artifacts in SARS-CoV-2 WGS data

bifrost_chewbbaca

ecoli_pathotypes

bifrost_dashboard

MicrobeSeq-Denmark

Location for SSI's microbial surveillance pipelines

microbeseq_nbdev_augment

Files to assist in setup of nbdev

Jupyter Notebook