• Stars
    star
    17
  • Rank 1,251,223 (Top 25 %)
  • Language
    Jupyter Notebook
  • License
    BSD 3-Clause "New...
  • Created almost 2 years ago
  • Updated about 1 year ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Cross-protein transfer learning for variant effect prediction

More Repositories

1

tape

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology.
Python
636
star
2

gpn

Genomic Pre-trained Network
Jupyter Notebook
182
star
3

tape-neurips2019

Tasks Assessing Protein Embeddings (TAPE), a set of five biologically relevant semi-supervised learning tasks spread across different domains of protein biology. (DEPRECATED)
Python
118
star
4

factored-attention

This repository contains code for reproducing results in our paper Interpreting Potts and Transformer Protein Models Through the Lens of Simplified Attention
Jupyter Notebook
56
star
5

mogwai

Python
25
star
6

rna-sieve

A library for the deconvolution of bulk cell samples using single-cell RNA expression data.
Mathematica
19
star
7

scquint

Jupyter Notebook
15
star
8

swga2

Python
9
star
9

CherryML

Scalable Maximum Likelihood Estimation of Phylogenetic Models
Python
8
star
10

scquint-analysis

Python
6
star
11

MultiCluster

Software for three-way clustering of multi-tissue multi-individual gene expression data using semi-nonnegative tensor decomposition
MATLAB
4
star
12

contact-geometry

Python
4
star
13

MOCHIS

One- and two-sample tests against general families of alternatives
Mathematica
3
star
14

HiDENSEC

Code for Tracing cancer evolution and heterogeneity using Hi-C
Jupyter Notebook
2
star
15

flinty

A Simple and Flexible Test of Sample Exchangeability with Applications to Statistical Genomics
Python
2
star
16

slc22a5

Variant effect prediction for SLC22A5 transporter gene using Potts models
Jupyter Notebook
1
star
17

EGGTART

Extensive GUI gives TASEP realization in real-time.
1
star