sokrypton/laxy

Stars
8
Rank 2,099,232 (Top 42 %)
Language
Jupyter Notebook
Created over 3 years ago
Updated about 3 years ago

sokrypton/laxy

sokrypton

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

lazy wrapper around jax

ColabFold

Making Protein folding accessible to all!

Jupyter Notebook

ColabDesign

Making Protein Design accessible to all via Google Colab!

GREMLIN_CPP

GREMLIN - learn MRF/potts model from input multiple sequence alignment! Implementation now available in C++ and Tensorflow/Python!

Jupyter Notebook

af2bind

Jupyter Notebook

map_align

Contact map alignment

af_backprop

seqmodels

Jupyter Notebook

ColabBio

random colab notebooks for biology

Jupyter Notebook

GREMLIN

GREMLIN is a method to learn a statistical model of a protein family that captures both conservation and co-evolution patterns in the family. The strength of measured co-evolution is strongly predictive of residue-residue contacts in the 3D structure of the protein.

tf_proteins

some tools for working with protein (PDB) files in tensorflow

Jupyter Notebook

seqsal

Jupyter Notebook

algosb_2021

for algosb workshop

Jupyter Notebook

TrDesign_partialhall

TrDesign w/ Partial Hallucination support

sp_deli

Jupyter Notebook

HelixFold

roscon2024

Jupyter Notebook

GREMLIN_LH

Jupyter Notebook

e2e

seqsal_v2

GREMLIN_CNN

Jupyter Notebook

EMBOIntegModelling23

Jupyter Notebook

AfDesign_partial

Jupyter Notebook

trdesign-motif

Codebase for our preprint using trRosetta to design proteins with discontinuous functional sites, found here: https://www.biorxiv.org/content/10.1101/2020.11.29.402743v1.abstract

ws2023

Jupyter Notebook

AM216

Material for lecture

Jupyter Notebook

casp15_analysis

Jupyter Notebook

AccAdam_TF2

TF2-compatible Accumulated Gradients for Adam