sofroniewn/tutorial-scipy2021-bioimage-analysis-fundamentals

Stars
30
Rank 839,658 (Top 17 %)
Language
Jupyter Notebook
License
BSD 3-Clause "New...
Created over 3 years ago
Updated over 3 years ago

sofroniewn/tutorial-scipy2021-bioimage-analysis-fundamentals

sofroniewn

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Tutorial for SciPy 2021 Bioimage Analysis Fundamentals in Python

napari-training-course

Lectures for a napari training course

Jupyter Notebook

electron-johnny-five-examples

Example electron apps using johnny-five to control hardware

time-stream

Stream timeseries data to a file

lightning-stream

Render a lighting vizualizations using a stream

image-demos

Jupyter Notebook

awesome-bioimage-analysis-challenges

A list of awesome bioimage analysis challenges

tactile-coding

Notebooks to accompany sofroniew-vlasov-2015

Jupyter Notebook

psf

Compute microscopy point spread functions (psf)

Jupyter Notebook

2pRAM-paper

Notebooks accompanying the 2-photon random access mesoscope (2p-RAM) paper

Jupyter Notebook

ml-proteins

Exploring machine learning for protein structure prediction and design

Jupyter Notebook

waver

Wave simulations

svoboda-lab-legacy

Whisker guided navigation rig

mesoscope

Jupyter Notebook

unmixer

Package for unmixing flourophores

Jupyter Notebook

proteoscope

Generating images of protein subcellular localization from sequences

Jupyter Notebook

mVR-experiments

Jupyter Notebook

SingleCellDetect

Module for detecting a single cell from an image

ray-to-line

metaneuro

napari-segmentation

napari segmentation plugin

pytorch-segmentation

Image segmentation using deep networks

Jupyter Notebook

2P-RAM-pipeline

Jupyter Notebook