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MMseqs2
MMseqs2: ultra fast and sensitive search and clustering suitehh-suite
Remote protein homology detection suite.metaeuk
MetaEuk - sensitive, high-throughput gene discovery and annotation for large-scale eukaryotic metagenomicsplass
sensitive and precise assembly of short sequencing readsCCMpred
Protein Residue-Residue Contacts from Correlated Mutations predicted quickly and accurately.MMseqs2-App
MMseqs2 app to run on your workstation or serversWIsH
Predict prokaryotic host for phage metagenomic sequencesspacedust
Discovery of conserved gene clusters in multiple genomesuniclust-pipeline
spacepharer
SpacePHARER CRISPR Spacer Phage-Host pAiRs findERprosstt
PRObabilistic Simulations of ScRNA-seq Tree-like TopologiesCCMgen
pdbx
pdbx is a parser module in python for structures of the protein data bank in the mmcif formatBaMMmotif
Bayesian Markov Model motif discovery - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.merlot
Reconstruct the lineage topology of a scRNA-seq differentiation dataset.kClust
kClust is a fast and sensitive clustering method for the clustering of protein sequences. It is able to cluster large protein databases down to 20-30% sequence identity. kClust generates a clustering where each cluster is represented by its longest sequence (representative sequence).b-lore
Bayesian multiple logistic regression for GWAS meta-analysisMMseqs
BaMMmotif2
Bayesian Markov Model motif discovery tool version 2 - An expectation maximization algorithm for the de novo discovery of enriched motifs as modelled by higher-order Markov models.ffindex_soedinglab
tejaas
Tejaas - a tool for discovering trans-eQTLsbbcontacts
Prediction of beta-strand pairing from direct coupling patternshhdatabase_cif70
Scripts to generate the pdb70 database for hh-suite on the basis of pdb's mmcif formatPEnG-motif
PEnG-motif is an open-source software package for searching statistically overrepresented motifs (position specific weight matrices, PWMs) in a set of DNA sequences.transannot
TransAnnot - a fast transcriptome annotation pipelineBaMM_webserver
Webserver for motif discovery with higher-order Bayesian Markov Models (BaMMs)metaG-ECCB18-partII
MMseqs2 tutorial for metagenomics sequence dataCCMgen-scripts
Contains plotting scripts, examples, and other small scripts relevant to CCMgen and the corresponding publication.mockinbird
PAR-CLIP data processing pipelinebipartite_motif_finder
BMF: Bipartite Motif FinderCoCo
Consensus CorrectionMMseqs2-Regression
MMseqs2 Regression Testingxxmotif
XXmotif: eXhaustive, weight matriX-based motif discovery in nucleotide sequencesprosstt-r
An R package with evaluation and visualization functions for the python PROSSTT packageLove Open Source and this site? Check out how you can help us