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snakemake
This is the development home of the workflow management system Snakemake. For general information, seesnakemake-wrappers
This is the development home of the Snakemake wrapper repository, seesnakefmt
The uncompromising Snakemake code formattersnakemake-github-action
A Github action for running a Snakemake workflowsnakemake-workflow-catalog
A statically generated catalog of available Snakemake workflowssnakedeploy
deploy a snakemake pipeline directly from version control (under development)snakemake-lang-vscode-plugin
Language support and snippets for Snakemake workflows (Snakefile, *.smk) for Visual Studio Code and Apache Theia.snakeface
The snakemake interface, currently works like a notebook (under development)snakemake-executor-plugin-slurm
A Snakemake executor plugin for submitting jobs to a SLURM clustersnakemake-tutorials
start of repository with various snakemake tutorials (under development)snakemake-hpc-teaching-material
snakemake-tutorial-data
Example data for the official Snakemake tutorialshournal-to-snakemake
snakemake-executor-plugin-aws-batch
A Snakemake executor plugin for AWS Batchsnakemake.github.io
Snakemake homepagesnakemake-executor-plugin-azure-batch
A Snakemake executor plugin for submitting jobs to Microsoft Azure Batch.snakedeploy-github-action
A github action for using snakedeployLove Open Source and this site? Check out how you can help us