Discover smujiang/WSITools Open Source project

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Rank 731,595 (Top 15 %)
Language
Python
License
GNU General Publi...
Created almost 5 years ago
Updated 4 months ago

smujiang

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Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.

Re-stained_WSIs_Registration

Re-stained whole slide image alignment

Python

WSIPenMarkingRemoval

Remove pen-marking annotations on whole slide images(WSIs) for data achiving.

Python

WSI2DICOM

Simple prototype of converting whole slide image (WSI) to multiframe DICOM images

Python

CalculateSUV

Matlab code for calculating SUV in PET images

HTML

CellularComposition

Interactive modules to digitally annotate H&E whole slide images, construct cell and tissue level features and classify cell types. Specifically for a case study of differentiating borderline and high-grade serous ovarian tumors.

Python

TumorStromaReaction

Quantitatively evaluate tumor stroma reaction within ovarian cancers, and establish assocaitaions to prognosis, molecular signatures.

Python

MxIF_DAPI_ref_QC

MxIF image quality checking

Python

ObjectDetectionAPIGuide

A self summarized tutorial for Object detection API. https://github.com/tensorflow/models/tree/master/research/object_detection

Cytomine_Python_Client-0.1.4_for_python_3.6

This is a installation package of Cytomine_Python_Client-0.1.4 for python 3.6. The original one is just compatible with python 2.7, which can be cloned from https://github.com/cytomine/Cytomine-python-client

Python

Cytomine_GetAnnotation

Pull annotations and the corrosponding image patches from a Cytomine server.

Python

smujiang/WSITools

smujiang

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