There are no reviews yet. Be the first to send feedback to the community and the maintainers!
WSITools
Tools for whole slide image (WSI) processing. Especially for (pairwise) patch extraction, annotation parsing and data preparation for deep learning purposes.Re-stained_WSIs_Registration
Re-stained whole slide image alignmentWSIPenMarkingRemoval
Remove pen-marking annotations on whole slide images(WSIs) for data achiving.WSI2DICOM
Simple prototype of converting whole slide image (WSI) to multiframe DICOM imagesCalculateSUV
Matlab code for calculating SUV in PET imagesCellularComposition
Interactive modules to digitally annotate H&E whole slide images, construct cell and tissue level features and classify cell types. Specifically for a case study of differentiating borderline and high-grade serous ovarian tumors.TumorStromaReaction
Quantitatively evaluate tumor stroma reaction within ovarian cancers, and establish assocaitaions to prognosis, molecular signatures.ObjectDetectionAPIGuide
A self summarized tutorial for Object detection API. https://github.com/tensorflow/models/tree/master/research/object_detectionCytomine_Python_Client-0.1.4_for_python_3.6
This is a installation package of Cytomine_Python_Client-0.1.4 for python 3.6. The original one is just compatible with python 2.7, which can be cloned from https://github.com/cytomine/Cytomine-python-clientCytomine_GetAnnotation
Pull annotations and the corrosponding image patches from a Cytomine server.Love Open Source and this site? Check out how you can help us