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ggrepel
π Repel overlapping text labels away from each other in your ggplot2 figures.awesome-vdj
π Tools and databases for analyzing HLA and VDJ genes.harmonypy
πΌ Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.snakefiles
π Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).tftargets
π― Human transcription factor target genes from 6 databases in convenient R format.pytabix
π Retrieve data in genomic intervals with a Python interface for tabix.picardmetrics
π¦ Run Picard on BAM files and collate 90 metrics into one file.snpsea
π Identify cell types and pathways affected by genetic risk loci.proxysnps
π Get SNP proxies from the 1000 Genomes Project.CENTIPEDE.tutorial
π How to use CENTIPEDE to determine if a transcription factor is bound.cellguide
π§ Navigate single-cell RNA-seq datasets in your web browser.homerkit
Read HOMER motif analysis output in R.allelefrequencies
π HLA allele frequencies in tab-delimited format, downloaded from AFND.hlabud
πΆ hlabud: HLA genotype analysis in Rsnpbook
π Explore 1000 Genomes variant data with JavaScript.fibrotime
π View the gene expression response to TNF and IL-17A with vanilla Javascript and HTML.circles
πxlmhg
π Non-parametric rank enrichment test for binary data.saturation
𧽠Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.dotfiles
Kamil's dotfilesslowkow.com
Personal website.pubmed-pairs
βοΈ Search PubMed for each pair of terms from two lists.arrayqc
Quality control metrics for microarray data.fern
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