slowkow/covid-stats slowkow/covid-stats

  • Stars
    star
    1
  • Language
    R
  • Created almost 2 years ago
  • Updated 11 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
slowkow/covid-stats
github

slowkow

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

New daily Covid cases and deaths in USA. Data from usafacts.org

More Repositories

1

ggrepel

πŸ“ Repel overlapping text labels away from each other in your ggplot2 figures.
R
1,203
star
2

awesome-vdj

πŸ“š Tools and databases for analyzing HLA and VDJ genes.
192
star
3

harmonypy

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
Python
184
star
4

snakefiles

🐍 Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
Python
88
star
5

tftargets

🎯 Human transcription factor target genes from 6 databases in convenient R format.
R
84
star
6

pytabix

πŸ“‡ Retrieve data in genomic intervals with a Python interface for tabix.
C
83
star
7

picardmetrics

🚦 Run Picard on BAM files and collate 90 metrics into one file.
Shell
39
star
8

snpsea

πŸ“Š Identify cell types and pathways affected by genetic risk loci.
C++
35
star
9

proxysnps

πŸ”– Get SNP proxies from the 1000 Genomes Project.
R
28
star
10

cellguide

🧭 Navigate single-cell RNA-seq datasets in your web browser.
JavaScript
26
star
11

CENTIPEDE.tutorial

πŸ› How to use CENTIPEDE to determine if a transcription factor is bound.
R
25
star
12

allelefrequencies

πŸ“‚ HLA allele frequencies in tab-delimited format, downloaded from AFND.
Python
18
star
13

hlabud

🐢 hlabud: HLA genotype analysis in R
TeX
16
star
14

homerkit

Read HOMER motif analysis output in R.
R
15
star
15

snpbook

πŸ“™ Explore 1000 Genomes variant data with JavaScript.
JavaScript
8
star
16

fibrotime

🍊 View the gene expression response to TNF and IL-17A with vanilla Javascript and HTML.
Jupyter Notebook
7
star
17

saturation

🧽 Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.
R
5
star
18

circles

🌈
HTML
5
star
19

xlmhg

πŸ“‰ Non-parametric rank enrichment test for binary data.
C++
5
star
20

pubmed-pairs

✌️ Search PubMed for each pair of terms from two lists.
JavaScript
4
star
21

dotfiles

Kamil's dotfiles
Vim Script
3
star
22

slowkow.com

Personal website.
HTML
3
star
23

arrayqc

Quality control metrics for microarray data.
R
2
star
24

fern

🌿 Barnsley fern
HTML
1
star