• Stars
    star
    5
  • Rank 2,861,937 (Top 57 %)
  • Language
    HTML
  • License
    MIT License
  • Created over 7 years ago
  • Updated over 7 years ago

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

🌈

More Repositories

1

ggrepel

📍 Repel overlapping text labels away from each other in your ggplot2 figures.
R
1,203
star
2

awesome-vdj

📚 Tools and databases for analyzing HLA and VDJ genes.
192
star
3

harmonypy

🎼 Integrate multiple high-dimensional datasets with fuzzy k-means and locally linear adjustments.
Python
184
star
4

snakefiles

🐍 Snakefiles for common RNA-seq data analysis workflows (STAR and Kallisto).
Python
88
star
5

tftargets

🎯 Human transcription factor target genes from 6 databases in convenient R format.
R
84
star
6

pytabix

📇 Retrieve data in genomic intervals with a Python interface for tabix.
C
83
star
7

picardmetrics

🚦 Run Picard on BAM files and collate 90 metrics into one file.
Shell
39
star
8

snpsea

📊 Identify cell types and pathways affected by genetic risk loci.
C++
35
star
9

proxysnps

🔖 Get SNP proxies from the 1000 Genomes Project.
R
28
star
10

cellguide

🧭 Navigate single-cell RNA-seq datasets in your web browser.
JavaScript
26
star
11

CENTIPEDE.tutorial

🐛 How to use CENTIPEDE to determine if a transcription factor is bound.
R
25
star
12

allelefrequencies

📂 HLA allele frequencies in tab-delimited format, downloaded from AFND.
Python
18
star
13

hlabud

🐶 hlabud: HLA genotype analysis in R
TeX
16
star
14

homerkit

Read HOMER motif analysis output in R.
R
15
star
15

snpbook

📙 Explore 1000 Genomes variant data with JavaScript.
JavaScript
8
star
16

fibrotime

🍊 View the gene expression response to TNF and IL-17A with vanilla Javascript and HTML.
Jupyter Notebook
7
star
17

saturation

🧽 Estimate sequencing saturation for GEX, VDJ, and ADT data from the 10x Genomics platform.
R
5
star
18

xlmhg

📉 Non-parametric rank enrichment test for binary data.
C++
5
star
19

pubmed-pairs

✌️ Search PubMed for each pair of terms from two lists.
JavaScript
4
star
20

dotfiles

Kamil's dotfiles
Vim Script
3
star
21

slowkow.com

Personal website.
HTML
3
star
22

arrayqc

Quality control metrics for microarray data.
R
2
star
23

covid-stats

New daily Covid cases and deaths in USA. Data from usafacts.org
R
1
star
24

fern

🌿 Barnsley fern
HTML
1
star