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jetson_nanopore_sequencing
A place to collate notes and resources of our journey into porting nanopore sequencing over to accessible, portable technology.
guppy_parameter_optimiser
A small bash script that automates sweeping Guppy parameters in an attempt to optimise basecalling rateillumina450k_filtering
A collection of resources to filter 'bad' probes from the Illumina 450k and EPIC methylation arraysdiagnostics_exome_reporting
Pipeline to filter whole exome vcf files and generate a report document for clinical diagnostics.Intro_to_GWAS
An introductory workshop to GWAS analysis using PLINK and Rmethylation_EWAS_workshop
This is a basic EWAS tutorial, introducing basic concepts for analysing methylation dataWES_ShinyDiscover
A Shiny interface to filter and identify variants of interest from whole exome dataelectronic_lab_notebook
This is an example of using blogdown, hugo and netlify to create and serve an electronic lab notebook.GPU-musings
A collection of my thoughts around GPUs for genomic analysis and sequencingpresentation_and_design_resources
A small repo to hold useful resources for various courses I teachsirselim.github.io
Personal website, blog and notebookVCF-DART_example_exomes
A few example exomes in vcf format for testing the VCF-DART annotation and reporting tooltSNE_plotting
some documentation for exploring the plotting of tSNE results from various data sourceslyritical
Analysis of song and artist lyrics in R - just for fun!!singularity-genmod
A quick singularity recipe for genmod to facilitate use in variant annotation pipelinescpg_annotate
small R script to provide quick annotation and gene lists for series of IlmnID's (450k probes)vega-lite_integration_testing
A basic repository housing files detailing R and Python integration testing of vega-lite graphicspresentation_learnings_from_NI
My presentation for the AGTA 2016 conference to be held in Auckland (Oct 9-12th, 2016)NvidiaGTC_2021
My 40min presentation for Nvidia Spring GTC 2021 on portable sequencing tech and Nvidia GPUsIntroduction-to-R-and-RStudio
An introductory overview of R and the fantastic IDE RStudio - rendered in Gitbook formatsirselim
R_notebooks
A quick overview of using R Notebooks as a form of electronic lab book for bioinformaticsautosomal_markers
Bookdown_Lab_Notebook
Testing bookdown as an electronic lab book optionLove Open Source and this site? Check out how you can help us
