sing-group/java-phylogenetic-tree-collapser

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Java
License
Apache License 2.0
Created almost 3 years ago
Updated almost 3 years ago

sing-group/java-phylogenetic-tree-collapser

sing-group

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A Java program to collapse phylogenetic trees in Newick format.

deep-learning-colonoscopy

Review in Deep Learning for Polyp Detection and Classification in Colonoscopy (https://doi.org/10.1016/j.neucom.2020.02.123).

GC4S

GUI Components for (Java) Swing

biojs-vis-blasterjs

BlasterJS - an open source JS library to display Blast results

ALTER

ALignment Transformation EnviRonment

aibench-project

The SING Java Framework for Scientific Apps

compi

Java Framework for Computational Pipelines

bdp4j

Big Data Pipelining For Java

my-brain-seq

myBrain-Seq: a Compi pipeline for miRNA-Seq data analysis in neuropsychiatry

bicycle

bicycle (bisulfite-based methylcytosine caller) is a next-generation sequencing bioinformatics pipeline able to perform a full DNA methylation level analysis

public-datasets-to-voc

Scripts for converting public polyp datasets to the PASCAL VOC format.

pandrugs-docker

A Dockerfile to generate an all-in-one pandrugs server

seda

SEquence DAtaset builder

pandrugs-backend

A Java backend for the PanDrugs application

mass-spectrometry-peak-matching

R implementation of the "Forward" peak matching algorithm implemented in Mass-Up (https://www.sing-group.org/mass-up/, https://doi.org/10.1186/s12859-015-0752-4)

pandrugs-frontend

An AngularJS frontend for the PanDrugs application

dewe

DEWE (Differential Expression Workflow Executor) is an open source application for easily executing Differential Expression analyses in RNA-Seq data.

la-images

LA-iMageS: a software for elemental distribution bioimaging using LA-ICP-MS data

BDBM

BLAST DataBase Manager

S2P

S2P is an open source application for fast and easy processing of 2D-gel and MALDI-based mass spectrometry protein data.

DiscoverRegex

Automatic Generator of Regular Expressions.

polydeep-object-detection

livia-core

LIve VIdeo Analysis framework (core)

livia-ui

LIve VIdeo Analysis framework (UI)

seda-compi-pipelines

This project provides a framework for easily creating pipelines of SEDA commands using Compi.

r-rsc-statistics-data-mining

Source code for the book chapter about Statistics, Data Mining and Modeling.

Markyt

Markyt is a Web-based multi-purpose annotation tool.

piba-frontend

Polyp Image BAnk (Frontend)

warcrepository

WarcRepository software

master-bioinformatica-aplicada-2020-2021

Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2020-2021)"

Jupyter Notebook

BEW

Public repository for Biofilmfs Experiment Workbench (BEW).

master-bioinformatica-aplicada-2022-2023

Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2022-2023)"

Jupyter Notebook

master-bioinformatica-aplicada-2023-2024

Machine Learning in Bioinformatics class at the "Máster en Bioinformática Aplicada a Medicina Personalizada y Salud (Curso 2023-2024)

Jupyter Notebook