shenwei356/rust-practice shenwei356/rust-practice

  • Stars
    star
    2
  • Language
  • Created 10 months ago
  • Updated 10 months ago
Twitter logo Share LinkedIn logo Share Facebook logo Share
shenwei356/rust-practice
github

shenwei356

Reviews

There are no reviews yet. Be the first to send feedback to the community and the maintainers!

Repository Details

Some tools in Rust for learning

More Repositories

1

seqkit

A cross-platform and ultrafast toolkit for FASTA/Q file manipulation
Go
1,066
star
2

csvtk

A cross-platform, efficient and practical CSV/TSV toolkit in Golang
Go
882
star
3

awesome

Awesome resources on Bioinformatics, data science, machine learning, programming language (Python, Golang, R, Perl) and miscellaneous stuff.
568
star
4

taxonkit

A Practical and Efficient NCBI Taxonomy Toolkit, also supports creating NCBI-style taxdump files for custom taxonomies
Go
256
star
5

brename

A practical cross-platform command-line tool for safely batch renaming files/directories via regular expression
Go
224
star
6

kmcp

Accurate metagenomic profiling && Fast large-scale sequence/genome searching
Go
139
star
7

LexicMap

LexicMap: efficient sequence alignment against millions of prokaryotic genomes
Go
96
star
8

bio_scripts

Practical, reusable scripts for bioinformatics
Perl
90
star
9

bio

A lightweight and high-performance bioinformatics package in Golang
Go
83
star
10

unikmer

Toolkit for k-mer with taxonomic information
Go
53
star
11

ClipboardTextJoiner

Monitoring system clipboard change and joining multi-line text. It's very useful when copying multi-line text from PDF files.
Perl
47
star
12

go4bio

Golang for Bioinformatics
31
star
13

gtdb-taxdump

GTDB taxonomy taxdump files with trackable TaxIds
R
28
star
14

easy_qsub

Easily submitting multiple PBS jobs or running local jobs in parallel. Multiple input files supported.
Python
27
star
15

countminsketch

An implementation of Count-Min Sketch in Golang
Go
24
star
16

taxid-changelog

NCBI taxonomic identifier (taxid) changelog, including taxids deletion, new adding, merge, reuse, and rank/name changes.
R
19
star
17

bwt

Burrows-Wheeler Transform and FM-index in golang
Go
18
star
18

cnote

A platform independent command line note app
Go
17
star
19

gtaxon

gTaxon - a fast cross-platform NCBI taxonomy data querying (gi2taxid, taxid2taxon, name2taxid, LCA) tool, with cmd client and REST API server for both local and remote server.
Go
15
star
20

easy_sbatch

easy_sbatch - Batch submitting Slurm jobs with script templates
Python
14
star
21

ncbi_acc2gtdb_acc

Mapping NCBI Genbank accession to GTDB accession
14
star
22

strobemers

A Go implementation of the strobemers (https://github.com/ksahlin/strobemers)
Go
14
star
23

ictv-taxdump

NCBI-style taxdump files for International Committee on Taxonomy of Viruses (ICTV)
12
star
24

crun

Run workflow mixed with concurrent and sequential jobs. Please use https://github.com/shenwei356/rush
Go
10
star
25

breader

breader (Buffered File Reader), asynchronous parsing and pre-processing while reading file. Safe cancellation is also supported.
Go
9
star
26

pinyin

收集汉字，结合汉语拼音来取名
Python
8
star
27

lexichash

LexicHash in Golang
Go
8
star
28

pand

Bitwise AND on two byte-slices using SIMD instructions
Go
7
star
29

unik

A k-mer serialization package for Golang
Go
7
star
30

kmers

bit-packed k-mers methods for Golang
Go
7
star
31

install-windows

Windows系统安装经验
6
star
32

perfect-bioinformatic-tools

What should perfect bioinformatic tools be like?
6
star
33

breseq-rm-bg

Removing control/background mutations from breseq output index.html
Go
5
star
34

bbuffer

An alternative of standard library bytes.Buffer
Go
5
star
35

dirsize

Summarize size of directories and files in directories
Go
5
star
36

datakit

CSV/TSV file manipulation and more. Please use my another tool: csvtk, https://github.com/shenwei356/csvtk
Python
4
star
37

util

Golang utility packages
Go
4
star
38

uint64-hash-bench

Benchmark of three uint64 hash functions
Go
3
star
39

simhash-eval

Go
2
star
40

sun2021-cami-profiles

Ground truth metagenomic profiles in CAMI format for the 25 metagenomic reads in Sun et al.
2
star
41

go-hashing-kmer-bench

Benchmark of hashing k-mers in Golang
Go
2
star
42

shenwei356

2
star
43

RNA-HairpinFigure

Draw hairpin-like text figure from RNA sequence and its secondary structure in dot-bracket notation.
Perl
2
star
44

BioUtil

Bioinformatics Perl modules
Perl
2
star
45

todo

A very simple online todo list application
Go
1
star
46

blast-nf

A nextflow-based BLAST command-line helper tool
Nextflow
1
star
47

easy_run

Run command with default options in configuration file
Python
1
star
48

swr

Wei Shen' R utilities
R
1
star
49

shenwei356.github.io

HTML
1
star
50

uintset

Fast uint64 Set in golang
Go
1
star
51

process_queue

Process queue for high CPU/RAM/time usage processes
Perl
1
star
52

roux2016-mock-virome-cami-profile

Ground truth metagenomic profiles in CAMI format for the mock virome communities in Roux et al.
1
star