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ngsplot
Quick mining and visualization of NGS data by integrating genomic databasesdiffreps
Differential analysis for ChIP-seq with biological replicateschip-seq_preprocess
A preprocessing pipeline for ChIP-seq, including alignment, quality control, and visualization.GeneOverlap
R package for testing and visualizing gene list overlapsregion_analysis
A python script used to annotate genomic intervals.ngsplotdb
Genome databases generation pipeline for ngs.plot and region_analysis.DeepRegFinder
DeepRegFinder is a deep learning based program used to identify DNA regulatory elements using ChIP-seqSPEctRA
A Scalable Pipeline for RNA‬‬‬-seq Ana‬‬lysispipelines_for_ChIP-seq_analysis
Pipelines for ChIP-seq analysis, such as peak calling, differential enrichment detection, and pausing index calculation for PolII.diffRepeats
Quantify repeat element enrichment with next-generation sequencing dataGene-Attributes
A shiny app that obtains the coordinates and description of an input gene list (Ensembl v90) using biomaRt package.RRHO2
Optimized RRHO2software-best-practice
The best software engineering practices to develop bioinformatic programsmiRNA_pipeline_for_miRanalyzer
A pipeline of miRNA by using miRanalyzerLove Open Source and this site? Check out how you can help us