sebschmi/abstract-datastructures-rs

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Created almost 3 years ago
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sebschmi/abstract-datastructures-rs

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Some traits defining data structures

verify-same-kmer-content

Verify that two given GFA or fasta files have the same kmer content

minimap2-homopolymer-decompression

Homopolymer decompress minimap alignments

snakemake-turso

Snakemake project template that can be executed on the turso federation (ukk02/vorna/...)

genome-graph-rs

Types as well as IO functions for genome graphs.

select-random-fastx

Select random records from fasta/fastq files

compact-genome-rs

Bit-packed genome storage

random-dna-generator-rs

Generate random DNA sequences for debugging bioinfo software

minimap2-paf-io

Read and write files in minimap2's PAF format.

fastx-statistics-rs

Rust tool to compute basic statistics of fasta or fastq files.

homopolymer-compress-rs

Homopolymer compression of genomic data.

bigraph-rs

Represent bigraphs in an abstract manner.

node-to-arc-centric-dbg

Convert a node-centric DBG into an arc-centric one

omnitigs-rs

Implementations of omnitig related algorithms.

wtdbg2-homopolymer-decompression

Replace homopolymer compressed reads in wtdbg2's .ctg.lay file with decompressed reads.

quast

A fork of the popular QUAST genome assembly evaluator to incorporate more advanced metrics

codegen-course

minimizer-iterator-rs

An iterator over the minimizers of a sequence.