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BioFormatsRead
This package can be used to read image data using BioFormats into numpy arrays. It was initially created to read CZI image files, but should work with many more image data files thanks to BioFormats.napari_zeiss
Use Napari Viewer to display CZI imagesnapari-czann-segment
Semantic Segmention and Image2Image using DeepLearning ONNX models packaged as *.czann files.PSF_XYZ_Bead_Fit
Automatic detection of beads for PSF measurement from Z-Stacks using python-bioformats.i2k_2022_zeiss
This repo contains all the material for the I2K 2022czi_playground
Small python package to simplify reading CZI Image Metadata (*.czi)czitools
This repository provides a collection of tools to simplify reading CZI (Carl Zeiss Image) pixel and metadata in Python. In addition it also contains other useful utilities to visualize CZI images inside Napari.Microscope_Camera_Compare
Python Tool to compare Camera Specificationsczi_demos
Collection of scripts and notebooks demostrating how to read and process CZI image files. Still in beta phase ...ZEN_Matlab
Tools and scripts connecting ZEN and MATLABLove Open Source and this site? Check out how you can help us