seananderson/ggplot2-FISH554

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seananderson/ggplot2-FISH554

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Course notes and exercises on ggplot2 for the FISH554 class at the University of Washington

glmm-course

Workshop exercises on regression, GLMs, mixed-effects models, and GLMMs in R

glmmfields

R package for Bayesian spatial and spatiotemporal GLMMs with possible extremes

bst

BibTeX style files for ecology journals

covidseir

Bayesian SEIR model to estimate the effects of social-distancing on COVID-19

bayes-course

An introduction to Bayesian data analysis with Stan (a work in progress)

seananderson.ca

Hugo backend to my personal site, CV, and blog

adv-r-course

Advanced R workshop

heavy-tails

Black-swan events in animal populations

ggsidekick

Helper function(s) for ggplot2. [Only theme_sleek() for now.]

multivariate-stan

Experimenting with multivariate regression in Stan

pandoc-template

An example manuscript setup in Pandoc

spatial-extremes

Code for 'Black swans in space: modelling spatiotemporal processes with extremes'

aenea-grammars

Grammars for Aenea / Dragonfly

paleobaselines

Paleontological baselines for evaluating extinction risk in the modern oceans

negbin-stan

Playing with negative binomial multilevel models in Stan

ecology-trends

Analysis for a paper on trends in ecology and conservation through 8 decades

ramlegacy

R package to download, import, convert, and cache the RAM Legacy Stock Assessment Database

stanhelpers

Helper functions for Stan/rstan

dplyr-intro-2014

dplyr and pipes introduction for stats beerz

kbm-macros

Keyboard Maestro macros for macOS voice control / voice coding

ecofolio

R package for measuring ecological portfolio effects

RTMB-TESA-spatial

Exercises for a workshop on geostatistical modelling with RTMB + GMRFs

sdmTMB-paper

Paper describing the sdmTMB R package

spatial-climate

metafolio

Simulate metapopulations for portfolio optimization

tesa-ggplot

Materials from a webinar on ggplot2 for the Technical Expertise in Stock Assessment program

phd

beta-regressions

ss3sim-cases

ss3sim case files; currently contains case files from UW FISH 600 papers

tex

BibTeX and LaTeX files

citations-talk

Notes for a talk on citations and citation managers

r-intro

clusterthat

Clustering tools for fisheries stock assessment ensembles

fsardown

Experiments with generating reproducible FSARs (Fisheries Science Advice Report) documents

celeb-spp

rickerAR1

burn-severity

Calibration model for burn severity from satellite indices (with a Bayesian ZOIB model)

jackets

R package for manipulating and plotting yellow jacket RFID data

robustmeta

R package for robust random-effect meta-regression with dependent effect sizes

dplyr-ggplot-intro-2017

Material for workshops on dplyr and ggplot2

dotfiles